Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.98□□□□□ -1.77
USP53Q70EK8 AL358472.1-201ENST00000431295 329 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AL445584.1-201ENST00000431451 330 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 HLA-N-201ENST00000437516 135 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.98□□□□□ -1.77
USP53Q70EK8 AC112492.4-201ENST00000456549 352 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 snoU109.2-201ENST00000459316 135 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AC069499.1-201ENST00000489433 509 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 RNU6-377P-201ENST00000515965 102 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 RNU1-103P-201ENST00000516502 125 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.98□□□□□ -1.77
USP53Q70EK8 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.98□□□□□ -1.77
USP53Q70EK8 MIR5696-201ENST00000578474 85 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.98□□□□□ -1.77
USP53Q70EK8 MIR432-201ENST00000606207 94 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AC069200.1-201ENST00000609511 323 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AL161912.2-201ENST00000565707 3007 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP53Q70EK8 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP53Q70EK8 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP53Q70EK8 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.98□□□□□ -1.77
USP53Q70EK8 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.98□□□□□ -1.77
USP53Q70EK8 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP53Q70EK8 ZNF299P-201ENST00000406845 1804 ntBASIC3.98□□□□□ -1.77
USP53Q70EK8 AL672296.1-201ENST00000427780 2158 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 AC091812.1-201ENST00000432235 1948 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
USP53Q70EK8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 RNU6-78P-201ENST00000362897 107 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 Y_RNA.153-201ENST00000363615 91 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 RNU6-574P-201ENST00000384265 107 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 RNU6-1156P-201ENST00000410365 100 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 RPL26P27-201ENST00000414397 437 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 AC096644.2-201ENST00000429278 159 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 AL353752.1-201ENST00000454946 260 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.97□□□□□ -1.77
USP53Q70EK8 NDUFB4P9-201ENST00000511646 388 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 RNU6-612P-201ENST00000516909 102 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 AC008269.2-201ENST00000561915 1105 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 AC120057.2-201ENST00000571520 271 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 MIR4503-201ENST00000582187 83 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 MIR7702-201ENST00000621931 59 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 MIR6500-201ENST00000622700 86 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 CDC27P3-201ENST00000635418 1910 ntBASIC3.97□□□□□ -1.77
USP53Q70EK8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
USP53Q70EK8 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.96□□□□□ -1.77
USP53Q70EK8 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
USP53Q70EK8 AC008669.1-201ENST00000565823 2178 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
USP53Q70EK8 AC008725.1-201ENST00000605123 2263 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
USP53Q70EK8 AC016588.2-201ENST00000632484 3021 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
USP53Q70EK8 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.96□□□□□ -1.78
USP53Q70EK8 Y_RNA.149-201ENST00000363558 117 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 RNU1-73P-201ENST00000383971 164 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 Y_RNA.485-201ENST00000384395 102 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR518D-201ENST00000385014 87 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 RPL21P17-201ENST00000397467 475 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR888-201ENST00000401186 77 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 U3.37-201ENST00000408528 213 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 AL691449.1-201ENST00000426570 421 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.96□□□□□ -1.78
USP53Q70EK8 PRSS3P4-201ENST00000453323 162 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.96□□□□□ -1.78
USP53Q70EK8 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.96□□□□□ -1.78
USP53Q70EK8 AC010265.1-201ENST00000513509 211 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 COX6CP5-201ENST00000527162 228 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.96□□□□□ -1.78
USP53Q70EK8 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR5701-3-201ENST00000578890 82 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR5701-1-201ENST00000585138 82 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR5701-2-201ENST00000615634 82 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 HMGB1P24-202ENST00000615653 685 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 AC084757.4-201ENST00000616350 526 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 AL138825.1-201ENST00000618587 192 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR4727-201ENST00000622232 55 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 MIR4272-201ENST00000635924 64 ntBASIC3.96□□□□□ -1.78
USP53Q70EK8 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.96□□□□□ -1.78
USP53Q70EK8 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.95□□□□□ -1.78
USP53Q70EK8 AC007656.2-201ENST00000624902 4547 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP53Q70EK8 MTND5P9-201ENST00000503854 1755 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
USP53Q70EK8 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 SNORD74.4-201ENST00000364129 80 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 RNU6-336P-201ENST00000364891 107 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 Y_RNA.389-201ENST00000383924 113 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 RNU6-658P-201ENST00000384606 106 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
USP53Q70EK8 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
USP53Q70EK8 RNU6-823P-201ENST00000391042 103 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 HMGN2P30-201ENST00000423237 256 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 172 ms