Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC093510.2-201ENST00000562820 896 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 MIR4295-201ENST00000585286 85 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AP000403.1-201ENST00000603349 851 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AL713866.2-201ENST00000603579 219 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AL138478.1-201ENST00000612252 832 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC091304.6-201ENST00000619761 202 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 MIR758-201ENST00000390227 88 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 MIR934-201ENST00000401241 83 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 USP9YP21-201ENST00000420603 432 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 KLF3P2-201ENST00000465138 268 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 SNORA31.6-201ENST00000516241 130 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AP005639.2-201ENST00000527592 928 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC004805.2-201ENST00000605382 482 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AL021997.1-201ENST00000605757 193 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC108706.1-201ENST00000611053 297 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC024581.2-201ENST00000619986 252 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AL445264.1-201ENST00000621719 171 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC097655.1-201ENST00000635075 318 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 AC107982.1-201ENST00000507171 1300 ntBASIC1.32□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-884P-201ENST00000363889 107 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 U6.112-201ENST00000384129 70 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 MIR561-201ENST00000385216 97 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNA5SP450-201ENST00000411206 102 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC020699.1-201ENST00000505161 445 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC091965.2-201ENST00000512324 613 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-703P-201ENST00000516946 107 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC021739.1-201ENST00000559631 174 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC022254.1-201ENST00000567857 235 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC091057.3-201ENST00000602684 733 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 DUSP12P1-201ENST00000612874 516 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 SNORA16B-201ENST00000364674 135 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 U3.13-201ENST00000364804 214 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-637P-201ENST00000384050 107 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-207P-201ENST00000384137 107 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-19P-201ENST00000384718 107 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-955P-201ENST00000410497 104 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 Z80107.1-201ENST00000436830 412 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AL161788.1-201ENST00000441805 169 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC006512.1-201ENST00000468816 291 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AL121769.1-201ENST00000469473 401 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC087884.1-201ENST00000469738 328 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC110760.3-202ENST00000515177 371 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-362P-201ENST00000516736 90 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC025588.2-201ENST00000604851 466 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC103810.9-201ENST00000606688 112 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC009974.1-201ENST00000608881 455 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AC010487.4-201ENST00000637027 61 ntBASIC1.31□□□□□ -2.2
CCDC88AQ3V6T2 AL079343.1-201ENST00000572358 1771 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-28P-201ENST00000362378 107 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 RPL26P27-201ENST00000414397 437 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 PTGES3P4-201ENST00000426243 356 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 MTCO1P3-201ENST00000429327 192 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AL596276.1-201ENST00000434465 418 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 FABP5P14-201ENST00000437273 393 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 RNU7-136P-201ENST00000458819 69 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 RPL30P12-201ENST00000474666 353 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 RPL36AP48-201ENST00000485521 314 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AC093752.1-206ENST00000511823 336 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 MRPS33P3-201ENST00000513456 322 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 SNORA31.16-201ENST00000516773 139 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AL359212.1-201ENST00000556608 614 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AP005229.2-201ENST00000609980 697 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AC104763.3-201ENST00000613765 618 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AC021755.4-201ENST00000616620 456 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AP002791.1-201ENST00000623291 381 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 ZNF702P-202ENST00000434269 1966 ntBASIC1.3□□□□□ -2.2
CCDC88AQ3V6T2 AC091812.1-201ENST00000432235 1948 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNA5SP257-201ENST00000363023 116 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-529P-201ENST00000363383 104 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-114P-201ENST00000384704 105 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-575P-201ENST00000411326 105 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RPL21P24-201ENST00000413752 448 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms