Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 SNORA22-201ENST00000383907 134 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 RNU6-217P-201ENST00000384164 104 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 SNORA22C-201ENST00000384614 134 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 RNU6-1151P-201ENST00000384684 107 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 FGF7P5-201ENST00000441829 291 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 RNA5SP112-201ENST00000515937 99 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 ZNF705CP-201ENST00000530515 889 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AL031176.1-201ENST00000604554 466 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC068276.1-201ENST00000605793 379 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC119674.1-220ENST00000641502 1048 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 RNU6-251P-201ENST00000363235 104 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 MIR934-201ENST00000401241 83 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 MTCYBP3-201ENST00000445588 1137 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 HMGN3P1-201ENST00000453847 193 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 CYP4A27P-201ENST00000567218 190 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 HMGN2P15-201ENST00000585707 270 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC013244.3-201ENST00000605614 388 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AC003001.2-201ENST00000616294 831 ntBASIC0.49□□□□□ -2.33
CHD9Q3L8U1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
CHD9Q3L8U1 AL356473.1-201ENST00000406203 1408 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
CHD9Q3L8U1 RNU6-72P-201ENST00000384285 79 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD9Q3L8U1 RPL26P6-201ENST00000440913 438 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD9Q3L8U1 RNU6-202P-201ENST00000515998 96 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD9Q3L8U1 MIR3126-201ENST00000577443 74 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 SNORD39.3-201ENST00000584451 71 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AC009974.1-201ENST00000608881 455 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 FTX_3.1-201ENST00000610451 147 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AL627230.6-201ENST00000611129 280 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AL138478.1-201ENST00000612252 832 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AC240442.1-201ENST00000616055 283 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AC017104.5-201ENST00000637647 639 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 GDI2P1-201ENST00000429312 1336 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 MIR421-201ENST00000365696 85 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 RNU6-441P-201ENST00000384545 106 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 MIR649-201ENST00000384843 97 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 MIR153-2-201ENST00000385225 87 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 RSU1P2-202ENST00000437884 485 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AL161788.1-201ENST00000441805 169 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AL590365.1-201ENST00000450788 243 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AC022447.1-201ENST00000515358 464 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AL356432.3-201ENST00000568952 465 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 MIR4299-201ENST00000577899 72 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 SNRPGP17-201ENST00000603780 214 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 MIR5739-201ENST00000619803 80 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 AC090772.4-201ENST00000623599 362 ntBASIC0.48□□□□□ -2.33
CHD9Q3L8U1 Y_RNA.132-201ENST00000363421 102 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 RNY3-201ENST00000365484 102 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 RNU6-741P-201ENST00000383889 107 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 RPL22P22-201ENST00000395439 379 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC005832.3-201ENST00000537929 631 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 MIR518A2-201ENST00000384966 87 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 MIR676-201ENST00000390702 67 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AL139098.1-201ENST00000407291 389 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AL354941.1-201ENST00000438600 464 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 SNORD115-3-201ENST00000363100 82 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 MIR146A-201ENST00000385201 99 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 MIR92A1-201ENST00000385233 78 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 RNU2-7P-201ENST00000410794 178 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 NCOR1P3-201ENST00000420479 303 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 SNORA4.4-201ENST00000515921 135 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms