Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 AC010378.1-201ENST00000619270 362 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 MIR1302-1-201ENST00000637932 143 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.26□□□□□ -1.73
SF3A1Q15459 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SF3A1Q15459 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SF3A1Q15459 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SF3A1Q15459 RNU6-527P-201ENST00000363425 104 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 RNA5SP139-201ENST00000364340 117 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 SNORD116-20-201ENST00000384529 92 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 MIR30B-201ENST00000384850 88 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AC074085.1-201ENST00000413598 418 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.25□□□□□ -1.73
SF3A1Q15459 RPS27P27-201ENST00000498779 255 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 RN7SKP24-201ENST00000515888 284 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 Y_RNA.691-201ENST00000516611 103 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 ACA59.2-201ENST00000517061 156 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AC010186.2-204ENST00000537668 439 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 DNAJC8P1-201ENST00000554535 372 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AC103996.1-201ENST00000555468 102 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 RPS3AP23-202ENST00000574601 686 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.25□□□□□ -1.73
SF3A1Q15459 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SF3A1Q15459 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AC112487.2-201ENST00000637950 304 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SF3A1Q15459 AC073073.2-201ENST00000609827 2578 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 AC010889.1-201ENST00000566193 2666 ntBASIC4.25□□□□□ -1.73
SF3A1Q15459 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.25□□□□□ -1.73
SF3A1Q15459 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
SF3A1Q15459 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SF3A1Q15459 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SF3A1Q15459 RNU6-428P-201ENST00000362942 107 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
SF3A1Q15459 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SF3A1Q15459 RNU6-1027P-201ENST00000383998 107 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 RNU6-19P-201ENST00000384718 107 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 AC096649.2-201ENST00000416186 393 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 PTGES3P4-201ENST00000426243 356 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 AL365496.1-201ENST00000426885 215 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 AC006946.1-201ENST00000429106 328 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 RPS3AP52-201ENST00000435639 297 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.24□□□□□ -1.73
SF3A1Q15459 AC107626.1-201ENST00000471084 183 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.24□□□□□ -1.73
SF3A1Q15459 AC018437.1-201ENST00000492214 406 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 SNORD19.2-201ENST00000516978 73 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 RAB11AP2-201ENST00000545905 639 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 CYCSP30-201ENST00000546447 172 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.24□□□□□ -1.73
SF3A1Q15459 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 RN7SL703P-201ENST00000578485 302 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.24□□□□□ -1.73
SF3A1Q15459 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.24□□□□□ -1.73
SF3A1Q15459 AL132765.2-201ENST00000610812 351 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.24□□□□□ -1.73
SF3A1Q15459 AL354798.1-201ENST00000622505 329 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 AC244517.12-201ENST00000623581 663 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 AC110079.1-202ENST00000635213 138 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 U4.7-201ENST00000638126 106 ntBASIC4.24□□□□□ -1.73
SF3A1Q15459 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SF3A1Q15459 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SF3A1Q15459 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SF3A1Q15459 RNU6-942P-201ENST00000363002 107 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SF3A1Q15459 RNU6-95P-201ENST00000384697 107 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 RNU6-750P-201ENST00000390946 107 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AL078595.1-201ENST00000404458 226 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 MIR548K-201ENST00000408406 116 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AL117339.3-201ENST00000418733 162 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AL139247.1-201ENST00000422768 325 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC093663.1-201ENST00000497190 394 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 RAC1P5-201ENST00000512182 576 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.23□□□□□ -1.73
SF3A1Q15459 TRMT10BP1-201ENST00000519377 943 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.23□□□□□ -1.73
SF3A1Q15459 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC087499.8-201ENST00000578406 226 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AC024153.1-201ENST00000603103 365 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AC009314.1-201ENST00000603871 304 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 AL160281.1-201ENST00000605307 311 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 CR392039.5-201ENST00000623201 510 ntBASIC4.23□□□□□ -1.73
SF3A1Q15459 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
SF3A1Q15459 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.23□□□□□ -1.73
SF3A1Q15459 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SF3A1Q15459 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SF3A1Q15459 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SF3A1Q15459 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.22□□□□□ -1.73
SF3A1Q15459 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SF3A1Q15459 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SF3A1Q15459 RNU6-933P-201ENST00000384424 107 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 MIR147B-201ENST00000390185 80 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms