Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.478-201ENST00000384358 107 ntBASIC4.06□□□□□ -1.76
RNF4P78317 RNU1-44P-201ENST00000384453 163 ntBASIC4.06□□□□□ -1.76
RNF4P78317 MIR607-201ENST00000385241 96 ntBASIC4.06□□□□□ -1.76
RNF4P78317 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 SNORA74C-2-201ENST00000411179 201 ntBASIC4.06□□□□□ -1.76
RNF4P78317 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.06□□□□□ -1.76
RNF4P78317 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.06□□□□□ -1.76
RNF4P78317 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.06□□□□□ -1.76
RNF4P78317 AC096920.1-201ENST00000423991 241 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.06□□□□□ -1.76
RNF4P78317 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.06□□□□□ -1.76
RNF4P78317 RN7SL303P-201ENST00000469773 251 ntBASIC4.06□□□□□ -1.76
RNF4P78317 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.06□□□□□ -1.76
RNF4P78317 FTH1P9-201ENST00000513251 355 ntBASIC4.06□□□□□ -1.76
RNF4P78317 RNU6-138P-201ENST00000515952 107 ntBASIC4.06□□□□□ -1.76
RNF4P78317 RNU6-703P-201ENST00000516946 107 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.06□□□□□ -1.76
RNF4P78317 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.06□□□□□ -1.76
RNF4P78317 AP004607.1-201ENST00000524456 203 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AP002770.2-201ENST00000543613 532 ntBASIC4.06□□□□□ -1.76
RNF4P78317 ATP5J2P6-201ENST00000565203 266 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.06□□□□□ -1.76
RNF4P78317 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.06□□□□□ -1.76
RNF4P78317 MIR4300-201ENST00000581016 96 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.06□□□□□ -1.76
RNF4P78317 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
RNF4P78317 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.06□□□□□ -1.76
RNF4P78317 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AC140113.4-201ENST00000622087 222 ntBASIC4.06□□□□□ -1.76
RNF4P78317 AC011944.2-201ENST00000624440 683 ntBASIC4.06□□□□□ -1.76
RNF4P78317 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.06□□□□□ -1.76
RNF4P78317 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
RNF4P78317 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
RNF4P78317 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
RNF4P78317 Y_RNA.143-201ENST00000363520 106 ntBASIC4.05□□□□□ -1.76
RNF4P78317 SNORA62-201ENST00000365493 153 ntBASIC4.05□□□□□ -1.76
RNF4P78317 RNU6-968P-201ENST00000384076 107 ntBASIC4.05□□□□□ -1.76
RNF4P78317 RNY3P4-201ENST00000384428 101 ntBASIC4.05□□□□□ -1.76
RNF4P78317 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
RNF4P78317 MIR548H3-201ENST00000408771 118 ntBASIC4.05□□□□□ -1.76
RNF4P78317 RNU2-20P-201ENST00000410425 191 ntBASIC4.05□□□□□ -1.76
RNF4P78317 RNA5SP44-201ENST00000410446 133 ntBASIC4.05□□□□□ -1.76
RNF4P78317 RNA5SP104-201ENST00000410989 118 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.05□□□□□ -1.76
RNF4P78317 C4BPAP2-201ENST00000428434 478 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AL591043.1-201ENST00000432461 424 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AC124916.1-201ENST00000444020 547 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AL139109.1-201ENST00000455491 297 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AL132838.2-201ENST00000492041 314 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AC022868.1-201ENST00000517767 391 ntBASIC4.05□□□□□ -1.76
RNF4P78317 DEFB108E-201ENST00000524692 240 ntBASIC4.05□□□□□ -1.76
RNF4P78317 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.05□□□□□ -1.76
RNF4P78317 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.05□□□□□ -1.76
RNF4P78317 AC010928.2-201ENST00000588017 287 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.05□□□□□ -1.76
RNF4P78317 AL365434.2-201ENST00000607979 234 ntBASIC4.05□□□□□ -1.76
RNF4P78317 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.05□□□□□ -1.76
RNF4P78317 FTX_3.1-201ENST00000610451 147 ntBASIC4.05□□□□□ -1.76
RNF4P78317 AC011476.5-201ENST00000615594 130 ntBASIC4.05□□□□□ -1.76
RNF4P78317 MIR6758-201ENST00000620653 63 ntBASIC4.05□□□□□ -1.76
RNF4P78317 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.05□□□□□ -1.76
RNF4P78317 AC140479.6-201ENST00000633535 357 ntBASIC4.05□□□□□ -1.76
RNF4P78317 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.05□□□□□ -1.76
RNF4P78317 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.05□□□□□ -1.76
RNF4P78317 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.05□□□□□ -1.76
RNF4P78317 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
RNF4P78317 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
RNF4P78317 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
RNF4P78317 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
RNF4P78317 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
RNF4P78317 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
RNF4P78317 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
RNF4P78317 AL391987.6-201ENST00000305671 199 ntBASIC4.04□□□□□ -1.76
RNF4P78317 MIR518D-201ENST00000385014 87 ntBASIC4.04□□□□□ -1.76
RNF4P78317 MIR195-201ENST00000385194 87 ntBASIC4.04□□□□□ -1.76
RNF4P78317 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
RNF4P78317 TMEM167AP1-201ENST00000423409 219 ntBASIC4.04□□□□□ -1.76
RNF4P78317 VDAC1P3-201ENST00000434069 851 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AC009296.1-201ENST00000443146 155 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AL353705.4-201ENST00000449661 238 ntBASIC4.04□□□□□ -1.76
RNF4P78317 snoU13.30-201ENST00000458951 104 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AP000873.1-201ENST00000463987 400 ntBASIC4.04□□□□□ -1.76
RNF4P78317 RPS23P7-201ENST00000466210 444 ntBASIC4.04□□□□□ -1.76
RNF4P78317 RPL35AP15-201ENST00000468042 339 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.04□□□□□ -1.76
RNF4P78317 RPL30P5-201ENST00000494923 336 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.04□□□□□ -1.76
RNF4P78317 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.04□□□□□ -1.76
RNF4P78317 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.04□□□□□ -1.76
RNF4P78317 RPL23AP97-201ENST00000568955 471 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AC024153.1-201ENST00000603103 365 ntBASIC4.04□□□□□ -1.76
RNF4P78317 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AC114781.5-201ENST00000615297 108 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AL021997.2-201ENST00000615674 271 ntBASIC4.04□□□□□ -1.76
RNF4P78317 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.04□□□□□ -1.76
RNF4P78317 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms