Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR548F1-201ENST00000408667 84 ntBASIC2.58□□□□□ -2
SOX3P41225 RNU4-46P-201ENST00000410818 138 ntBASIC2.58□□□□□ -2
SOX3P41225 EEF1A1P40-201ENST00000412883 573 ntBASIC2.58□□□□□ -2
SOX3P41225 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.58□□□□□ -2
SOX3P41225 EIF1P1-201ENST00000421436 341 ntBASIC2.58□□□□□ -2
SOX3P41225 MTCYBP8-201ENST00000422855 651 ntBASIC2.58□□□□□ -2
SOX3P41225 SKA2P1-201ENST00000425592 390 ntBASIC2.58□□□□□ -2
SOX3P41225 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.58□□□□□ -2
SOX3P41225 AC104332.2-201ENST00000429959 156 ntBASIC2.58□□□□□ -2
SOX3P41225 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.58□□□□□ -2
SOX3P41225 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.58□□□□□ -2
SOX3P41225 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.58□□□□□ -2
SOX3P41225 UBE2V1P8-201ENST00000437166 265 ntBASIC2.58□□□□□ -2
SOX3P41225 BRK1P2-201ENST00000442875 223 ntBASIC2.58□□□□□ -2
SOX3P41225 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.58□□□□□ -2
SOX3P41225 AL590639.1-201ENST00000456484 337 ntBASIC2.58□□□□□ -2
SOX3P41225 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.58□□□□□ -2
SOX3P41225 AL031183.1-201ENST00000457667 207 ntBASIC2.58□□□□□ -2
SOX3P41225 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.58□□□□□ -2
SOX3P41225 RNA5SP356-201ENST00000515972 94 ntBASIC2.58□□□□□ -2
SOX3P41225 Y_RNA.704-201ENST00000516851 102 ntBASIC2.58□□□□□ -2
SOX3P41225 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SOX3P41225 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.58□□□□□ -2
SOX3P41225 AC090136.1-201ENST00000520009 240 ntBASIC2.58□□□□□ -2
SOX3P41225 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.58□□□□□ -2
SOX3P41225 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.58□□□□□ -2
SOX3P41225 AC079600.2-201ENST00000550076 130 ntBASIC2.58□□□□□ -2
SOX3P41225 AL391261.3-201ENST00000557194 520 ntBASIC2.58□□□□□ -2
SOX3P41225 AL157871.3-201ENST00000557231 293 ntBASIC2.58□□□□□ -2
SOX3P41225 AC138761.3-201ENST00000579993 334 ntBASIC2.58□□□□□ -2
SOX3P41225 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.58□□□□□ -2
SOX3P41225 ATP1B3P1-201ENST00000605365 821 ntBASIC2.58□□□□□ -2
SOX3P41225 AC092794.1-201ENST00000612734 582 ntBASIC2.58□□□□□ -2
SOX3P41225 AC090517.2-201ENST00000614966 680 ntBASIC2.58□□□□□ -2
SOX3P41225 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.58□□□□□ -2
SOX3P41225 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
SOX3P41225 AC103988.1-201ENST00000566382 2177 ntBASIC2.57□□□□□ -2
SOX3P41225 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.57□□□□□ -2
SOX3P41225 AC092593.1-201ENST00000515413 1815 ntBASIC2.57□□□□□ -2
SOX3P41225 Y_RNA.33-201ENST00000362591 102 ntBASIC2.57□□□□□ -2
SOX3P41225 RNU6-552P-201ENST00000362869 119 ntBASIC2.57□□□□□ -2
SOX3P41225 RNU6-395P-201ENST00000365662 106 ntBASIC2.57□□□□□ -2
SOX3P41225 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.57□□□□□ -2
SOX3P41225 RNU1-73P-201ENST00000383971 164 ntBASIC2.57□□□□□ -2
SOX3P41225 Y_RNA.510-201ENST00000384511 114 ntBASIC2.57□□□□□ -2
SOX3P41225 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.57□□□□□ -2
SOX3P41225 RPL21P2-201ENST00000440049 481 ntBASIC2.57□□□□□ -2
SOX3P41225 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.57□□□□□ -2
SOX3P41225 AC003071.1-201ENST00000451219 789 ntBASIC2.57□□□□□ -2
SOX3P41225 MTATP6P7-201ENST00000453315 681 ntBASIC2.57□□□□□ -2
SOX3P41225 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.57□□□□□ -2
SOX3P41225 RNU7-23P-201ENST00000459465 62 ntBASIC2.57□□□□□ -2
SOX3P41225 AC104472.2-201ENST00000469035 601 ntBASIC2.57□□□□□ -2
SOX3P41225 AC009901.1-201ENST00000506703 541 ntBASIC2.57□□□□□ -2
SOX3P41225 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.57□□□□□ -2
SOX3P41225 RNU6-56P-201ENST00000516986 93 ntBASIC2.57□□□□□ -2
SOX3P41225 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.57□□□□□ -2
SOX3P41225 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.57□□□□□ -2
SOX3P41225 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.57□□□□□ -2
SOX3P41225 HPRT1P3-201ENST00000539521 576 ntBASIC2.57□□□□□ -2
SOX3P41225 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.57□□□□□ -2
SOX3P41225 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.57□□□□□ -2
SOX3P41225 AC007938.3-201ENST00000604965 623 ntBASIC2.57□□□□□ -2
SOX3P41225 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.57□□□□□ -2
SOX3P41225 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SOX3P41225 MTND4P35-201ENST00000604257 1375 ntBASIC2.57□□□□□ -2
SOX3P41225 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.57□□□□□ -2
SOX3P41225 AP003122.5-201ENST00000527668 3766 ntBASIC2.56□□□□□ -2
SOX3P41225 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.56□□□□□ -2
SOX3P41225 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
SOX3P41225 NACAP2-201ENST00000318548 624 ntBASIC2.56□□□□□ -2
SOX3P41225 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.56□□□□□ -2
SOX3P41225 Y_RNA.402-201ENST00000383972 102 ntBASIC2.56□□□□□ -2
SOX3P41225 Y_RNA.450-201ENST00000384198 113 ntBASIC2.56□□□□□ -2
SOX3P41225 AL139039.1-201ENST00000401900 692 ntBASIC2.56□□□□□ -2
SOX3P41225 AL138827.1-201ENST00000402666 306 ntBASIC2.56□□□□□ -2
SOX3P41225 RNU6-908P-201ENST00000410160 94 ntBASIC2.56□□□□□ -2
SOX3P41225 RNU6-648P-201ENST00000410190 107 ntBASIC2.56□□□□□ -2
SOX3P41225 RNU6-1025P-201ENST00000410629 104 ntBASIC2.56□□□□□ -2
SOX3P41225 NDUFS5P4-201ENST00000412983 318 ntBASIC2.56□□□□□ -2
SOX3P41225 USP9YP6-201ENST00000413550 854 ntBASIC2.56□□□□□ -2
SOX3P41225 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.56□□□□□ -2
SOX3P41225 HMGN2P30-201ENST00000423237 256 ntBASIC2.56□□□□□ -2
SOX3P41225 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.56□□□□□ -2
SOX3P41225 MYL8P-204ENST00000431574 518 ntBASIC2.56□□□□□ -2
SOX3P41225 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.56□□□□□ -2
SOX3P41225 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.56□□□□□ -2
SOX3P41225 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.56□□□□□ -2
SOX3P41225 TRBV1-201ENST00000476502 284 ntBASIC2.56□□□□□ -2
SOX3P41225 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.56□□□□□ -2
SOX3P41225 AC022493.1-201ENST00000492984 337 ntBASIC2.56□□□□□ -2
SOX3P41225 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.56□□□□□ -2
SOX3P41225 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.56□□□□□ -2
SOX3P41225 AC104136.1-201ENST00000512969 394 ntBASIC2.56□□□□□ -2
SOX3P41225 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.56□□□□□ -2
SOX3P41225 RNU6-1281P-201ENST00000516223 105 ntBASIC2.56□□□□□ -2
SOX3P41225 AC025755.1-201ENST00000521306 278 ntBASIC2.56□□□□□ -2
SOX3P41225 HIF1AP1-201ENST00000553642 175 ntBASIC2.56□□□□□ -2
SOX3P41225 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.56□□□□□ -2
SOX3P41225 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms