Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-98P-201ENST00000384173 107 ntBASIC0.64□□□□□ -2.31
CUX1P39880 RNU6-750P-201ENST00000390946 107 ntBASIC0.64□□□□□ -2.31
CUX1P39880 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
CUX1P39880 RPS24P7-201ENST00000416921 246 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.64□□□□□ -2.31
CUX1P39880 AC007742.1-201ENST00000425789 329 ntBASIC0.64□□□□□ -2.31
CUX1P39880 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.64□□□□□ -2.31
CUX1P39880 ELOCP26-201ENST00000436067 329 ntBASIC0.64□□□□□ -2.31
CUX1P39880 SNRPEP7-201ENST00000438350 220 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AL354941.1-201ENST00000438600 464 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AC004865.1-201ENST00000442276 1003 ntBASIC0.64□□□□□ -2.31
CUX1P39880 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.64□□□□□ -2.31
CUX1P39880 RPS20P24-201ENST00000457473 361 ntBASIC0.64□□□□□ -2.31
CUX1P39880 SNORA31.6-201ENST00000516241 130 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.64□□□□□ -2.31
CUX1P39880 AC008498.1-201ENST00000613012 531 ntBASIC0.64□□□□□ -2.31
CUX1P39880 MTCO1P23-201ENST00000415223 1526 ntBASIC0.64□□□□□ -2.31
CUX1P39880 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
CUX1P39880 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CUX1P39880 RNU6-748P-201ENST00000384648 107 ntBASIC0.64□□□□□ -2.31
CUX1P39880 MTCO1P3-201ENST00000429327 192 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AL592447.1-201ENST00000447592 540 ntBASIC0.64□□□□□ -2.31
CUX1P39880 SNORA4.4-201ENST00000515921 135 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AC034114.1-201ENST00000520293 285 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AL391261.3-201ENST00000557194 520 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC0.64□□□□□ -2.31
CUX1P39880 MTND4LP5-201ENST00000605152 292 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AL356585.4-201ENST00000623078 1229 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AL512506.2-201ENST00000624472 458 ntBASIC0.64□□□□□ -2.31
CUX1P39880 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.63□□□□□ -2.31
CUX1P39880 SNORA50A-201ENST00000384225 134 ntBASIC0.63□□□□□ -2.31
CUX1P39880 RNU6-31P-201ENST00000384388 108 ntBASIC0.63□□□□□ -2.31
CUX1P39880 RNU2-49P-201ENST00000410666 184 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AL512844.2-201ENST00000433990 593 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AL157398.1-201ENST00000452981 186 ntBASIC0.63□□□□□ -2.31
CUX1P39880 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.63□□□□□ -2.31
CUX1P39880 AC134050.1-201ENST00000495088 933 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.63□□□□□ -2.31
CUX1P39880 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.63□□□□□ -2.31
CUX1P39880 RNA5SP112-201ENST00000515937 99 ntBASIC0.63□□□□□ -2.31
CUX1P39880 RNU6-1095P-201ENST00000516148 108 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AC067904.2-201ENST00000517322 1283 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.63□□□□□ -2.31
CUX1P39880 AC136932.1-201ENST00000574771 208 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AL355472.4-201ENST00000610233 626 ntBASIC0.63□□□□□ -2.31
CUX1P39880 AC040168.1-201ENST00000623594 991 ntBASIC0.63□□□□□ -2.31
CUX1P39880 RNU1-96P-201ENST00000364163 162 ntBASIC0.62□□□□□ -2.31
CUX1P39880 AL449283.1-202ENST00000418249 604 ntBASIC0.62□□□□□ -2.31
CUX1P39880 EIF4EP2-201ENST00000422816 654 ntBASIC0.62□□□□□ -2.31
CUX1P39880 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.62□□□□□ -2.31
CUX1P39880 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.62□□□□□ -2.31
CUX1P39880 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.62□□□□□ -2.31
CUX1P39880 AC091435.1-201ENST00000505442 584 ntBASIC0.62□□□□□ -2.31
CUX1P39880 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.62□□□□□ -2.31
CUX1P39880 FAM157A-202ENST00000615155 405 ntBASIC0.62□□□□□ -2.31
CUX1P39880 AC099842.1-201ENST00000619919 596 ntBASIC0.62□□□□□ -2.31
CUX1P39880 AC090772.4-201ENST00000623599 362 ntBASIC0.62□□□□□ -2.31
CUX1P39880 AL049641.1-201ENST00000441055 1948 ntBASIC0.61□□□□□ -2.31
CUX1P39880 MIR1290-201ENST00000408735 78 ntBASIC0.61□□□□□ -2.31
CUX1P39880 RNU2-63P-201ENST00000410792 194 ntBASIC0.61□□□□□ -2.31
CUX1P39880 RPS15AP5-201ENST00000436276 388 ntBASIC0.61□□□□□ -2.31
CUX1P39880 AL135790.2-201ENST00000437701 267 ntBASIC0.61□□□□□ -2.31
CUX1P39880 RSU1P2-202ENST00000437884 485 ntBASIC0.61□□□□□ -2.31
CUX1P39880 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.61□□□□□ -2.31
CUX1P39880 AL049734.2-201ENST00000441066 616 ntBASIC0.61□□□□□ -2.31
CUX1P39880 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.61□□□□□ -2.31
CUX1P39880 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.61□□□□□ -2.31
CUX1P39880 ARPC3P5-201ENST00000448802 534 ntBASIC0.61□□□□□ -2.31
CUX1P39880 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.61□□□□□ -2.31
CUX1P39880 RNU7-40P-201ENST00000516397 64 ntBASIC0.61□□□□□ -2.31
CUX1P39880 OR8K4P-201ENST00000534608 872 ntBASIC0.61□□□□□ -2.31
CUX1P39880 AC005668.1-201ENST00000571142 476 ntBASIC0.61□□□□□ -2.31
CUX1P39880 MIR4802-201ENST00000581881 80 ntBASIC0.61□□□□□ -2.31
CUX1P39880 AL121652.1-201ENST00000608851 448 ntBASIC0.61□□□□□ -2.31
CUX1P39880 AC084824.5-201ENST00000612009 413 ntBASIC0.61□□□□□ -2.31
CUX1P39880 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC0.61□□□□□ -2.31
CUX1P39880 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.61□□□□□ -2.31
CUX1P39880 Y_RNA.136-201ENST00000363444 102 ntBASIC0.6□□□□□ -2.31
CUX1P39880 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.6□□□□□ -2.31
CUX1P39880 MIR518D-201ENST00000385014 87 ntBASIC0.6□□□□□ -2.31
CUX1P39880 TAF9BP2-201ENST00000400856 499 ntBASIC0.6□□□□□ -2.31
CUX1P39880 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.6□□□□□ -2.31
CUX1P39880 RAC1P7-201ENST00000445367 377 ntBASIC0.6□□□□□ -2.31
CUX1P39880 PRELID3BP1-201ENST00000457142 540 ntBASIC0.6□□□□□ -2.31
CUX1P39880 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.6□□□□□ -2.31
CUX1P39880 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
CUX1P39880 RNU6-730P-201ENST00000383954 104 ntBASIC0.59□□□□□ -2.31
CUX1P39880 AC006461.1-201ENST00000412637 326 ntBASIC0.59□□□□□ -2.31
CUX1P39880 TAAR7P-201ENST00000436141 242 ntBASIC0.59□□□□□ -2.31
CUX1P39880 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.59□□□□□ -2.31
CUX1P39880 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.59□□□□□ -2.31
CUX1P39880 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.59□□□□□ -2.31
CUX1P39880 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.59□□□□□ -2.31
CUX1P39880 RNU6-902P-201ENST00000517212 91 ntBASIC0.59□□□□□ -2.31
CUX1P39880 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
CUX1P39880 AC007151.1-201ENST00000572774 483 ntBASIC0.59□□□□□ -2.31
CUX1P39880 MIR4765-201ENST00000585007 77 ntBASIC0.59□□□□□ -2.31
CUX1P39880 AC007349.4-201ENST00000608114 532 ntBASIC0.59□□□□□ -2.31
CUX1P39880 MIR6130-201ENST00000619419 109 ntBASIC0.59□□□□□ -2.31
CUX1P39880 MTND5P30-201ENST00000452896 1731 ntBASIC0.59□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms