Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 FER-210ENST00000628534 558 ntTSL 5 BASIC3.14□□□□□ -1.91
SHMT1P34896 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.14□□□□□ -1.91
SHMT1P34896 AL512643.1-201ENST00000635735 524 ntBASIC3.14□□□□□ -1.91
SHMT1P34896 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT1P34896 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHMT1P34896 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SHMT1P34896 RNU6-1090P-201ENST00000364065 94 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 RNU6-1035P-201ENST00000384477 107 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 RNU6-550P-201ENST00000391057 101 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 MIR1277-201ENST00000408536 78 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 USP9YP6-201ENST00000413550 854 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.13□□□□□ -1.91
SHMT1P34896 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SHMT1P34896 MTCYBP8-201ENST00000422855 651 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AL160275.3-201ENST00000423876 471 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.13□□□□□ -1.91
SHMT1P34896 AC000111.3-201ENST00000433478 193 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AL118520.1-201ENST00000450770 291 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 CECR9-201ENST00000453421 199 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 SNRPFP3-201ENST00000457792 225 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.13□□□□□ -1.91
SHMT1P34896 EIF4EP3-201ENST00000498782 656 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AC096725.1-201ENST00000514266 313 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 RNA5SP148-201ENST00000516527 94 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.13□□□□□ -1.91
SHMT1P34896 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.13□□□□□ -1.91
SHMT1P34896 MTND1P35-201ENST00000526739 508 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AP005435.4-201ENST00000529514 284 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.13□□□□□ -1.91
SHMT1P34896 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.13□□□□□ -1.91
SHMT1P34896 AMZ2P1-203ENST00000565833 850 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 SNORA59B-202ENST00000578183 701 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AL133393.1-201ENST00000603277 287 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AC068944.2-201ENST00000610373 403 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AC007014.2-201ENST00000615581 479 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 YWHAEP7-203ENST00000622054 312 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AC092608.2-201ENST00000624427 218 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.13□□□□□ -1.91
SHMT1P34896 Z99571.1-201ENST00000636677 394 ntBASIC3.13□□□□□ -1.91
SHMT1P34896 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
SHMT1P34896 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
SHMT1P34896 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.13□□□□□ -1.91
SHMT1P34896 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.12□□□□□ -1.91
SHMT1P34896 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT1P34896 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT1P34896 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT1P34896 RNU6-552P-201ENST00000362869 119 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 RNU6-116P-201ENST00000384042 109 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 SNORA67.4-201ENST00000384688 142 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 RNU6-908P-201ENST00000410160 94 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 SNRPEP9-201ENST00000436794 238 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.12□□□□□ -1.91
SHMT1P34896 AC104058.1-201ENST00000448028 297 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 AC092989.1-201ENST00000481235 277 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 RNA5SP401-201ENST00000515920 127 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 RNA5SP282-201ENST00000516355 108 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.12□□□□□ -1.91
SHMT1P34896 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.12□□□□□ -1.91
SHMT1P34896 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.12□□□□□ -1.91
SHMT1P34896 BNIP3P30-201ENST00000601184 574 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 HSPE1P7-201ENST00000604681 321 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 AC004805.2-201ENST00000605382 482 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 FTX_3.1-201ENST00000610451 147 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.12□□□□□ -1.91
SHMT1P34896 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SHMT1P34896 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.12□□□□□ -1.91
SHMT1P34896 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHMT1P34896 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
SHMT1P34896 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
SHMT1P34896 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHMT1P34896 Y_RNA.256-201ENST00000364594 104 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 SNORA4.3-201ENST00000365564 137 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 RNU2-68P-201ENST00000410878 191 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AC009963.1-201ENST00000417265 157 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT1P34896 RPL36AP53-201ENST00000432891 316 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT1P34896 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT1P34896 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT1P34896 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT1P34896 AL117351.2-201ENST00000513571 157 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT1P34896 RN7SKP282-201ENST00000516824 299 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 RNA5SP165-201ENST00000517142 115 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 RNU6-1315P-201ENST00000517187 99 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT1P34896 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.11□□□□□ -1.91
SHMT1P34896 HIF1AP1-201ENST00000553642 175 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AC027176.1-201ENST00000560204 514 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 MIR1273C-201ENST00000578669 77 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT1P34896 AC104458.1-201ENST00000608243 463 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 DISC2.1-201ENST00000612827 205 ntBASIC3.11□□□□□ -1.91
SHMT1P34896 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT1P34896 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT1P34896 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SHMT1P34896 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SHMT1P34896 MTND5P19-201ENST00000424872 1794 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 235.1 ms