Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNORD19.2-201ENST00000516978 73 ntBASIC2.25□□□□□ -2.05
SDC1P18827 SCARNA11.3-201ENST00000517276 130 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.25□□□□□ -2.05
SDC1P18827 AP000873.5-201ENST00000533906 236 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AC087241.2-201ENST00000535801 324 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.25□□□□□ -2.05
SDC1P18827 AC007151.1-201ENST00000572774 483 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AC103810.1-201ENST00000579873 453 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.25□□□□□ -2.05
SDC1P18827 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
SDC1P18827 MIR6134-201ENST00000617606 109 ntBASIC2.25□□□□□ -2.05
SDC1P18827 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AC090582.1-201ENST00000636321 199 ntBASIC2.25□□□□□ -2.05
SDC1P18827 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.25□□□□□ -2.05
SDC1P18827 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.25□□□□□ -2.05
SDC1P18827 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SDC1P18827 AC004520.1-201ENST00000608362 1413 ntBASIC2.25□□□□□ -2.05
SDC1P18827 AC135776.4-201ENST00000624300 1904 ntBASIC2.25□□□□□ -2.05
SDC1P18827 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SDC1P18827 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.24□□□□□ -2.05
SDC1P18827 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.24□□□□□ -2.05
SDC1P18827 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
SDC1P18827 RNU6-898P-201ENST00000365627 104 ntBASIC2.24□□□□□ -2.05
SDC1P18827 Y_RNA.576-201ENST00000384781 102 ntBASIC2.24□□□□□ -2.05
SDC1P18827 MIR518D-201ENST00000385014 87 ntBASIC2.24□□□□□ -2.05
SDC1P18827 UBE2V1P2-201ENST00000397758 440 ntBASIC2.24□□□□□ -2.05
SDC1P18827 U3.37-201ENST00000408528 213 ntBASIC2.24□□□□□ -2.05
SDC1P18827 EEF1A1P40-201ENST00000412883 573 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.24□□□□□ -2.05
SDC1P18827 MTCO2P34-201ENST00000421994 607 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AL358934.1-201ENST00000432346 324 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.24□□□□□ -2.05
SDC1P18827 MTND4P32-201ENST00000437189 1237 ntBASIC2.24□□□□□ -2.05
SDC1P18827 RPS15AP9-201ENST00000439856 381 ntBASIC2.24□□□□□ -2.05
SDC1P18827 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.24□□□□□ -2.05
SDC1P18827 AL513328.1-201ENST00000446460 224 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AL583843.1-201ENST00000456070 346 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.24□□□□□ -2.05
SDC1P18827 AL121769.1-201ENST00000469473 401 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AC112206.3-201ENST00000514578 389 ntBASIC2.24□□□□□ -2.05
SDC1P18827 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.24□□□□□ -2.05
SDC1P18827 SNORD27.1-201ENST00000516319 72 ntBASIC2.24□□□□□ -2.05
SDC1P18827 SNORA31.11-201ENST00000516528 139 ntBASIC2.24□□□□□ -2.05
SDC1P18827 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
SDC1P18827 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.24□□□□□ -2.05
SDC1P18827 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.24□□□□□ -2.05
SDC1P18827 AC006362.1-201ENST00000567392 174 ntBASIC2.24□□□□□ -2.05
SDC1P18827 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.24□□□□□ -2.05
SDC1P18827 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AC009509.4-201ENST00000619202 509 ntBASIC2.24□□□□□ -2.05
SDC1P18827 AL359740.1-201ENST00000624340 592 ntBASIC2.24□□□□□ -2.05
SDC1P18827 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
SDC1P18827 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
SDC1P18827 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.24□□□□□ -2.05
SDC1P18827 AC093536.2-201ENST00000565257 1406 ntBASIC2.24□□□□□ -2.05
SDC1P18827 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
SDC1P18827 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.24□□□□□ -2.05
SDC1P18827 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SDC1P18827 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
SDC1P18827 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.23□□□□□ -2.05
SDC1P18827 HSPA8P4-201ENST00000511877 1920 ntBASIC2.23□□□□□ -2.05
SDC1P18827 RNU6-181P-201ENST00000363225 107 ntBASIC2.23□□□□□ -2.05
SDC1P18827 SNORD115-7-201ENST00000365306 82 ntBASIC2.23□□□□□ -2.05
SDC1P18827 Y_RNA.359-201ENST00000365498 102 ntBASIC2.23□□□□□ -2.05
SDC1P18827 MIR578-201ENST00000384828 96 ntBASIC2.23□□□□□ -2.05
SDC1P18827 U3.26-201ENST00000391236 204 ntBASIC2.23□□□□□ -2.05
SDC1P18827 USP9YP6-201ENST00000413550 854 ntBASIC2.23□□□□□ -2.05
SDC1P18827 PIGFP2-201ENST00000421400 651 ntBASIC2.23□□□□□ -2.05
SDC1P18827 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.23□□□□□ -2.05
SDC1P18827 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.23□□□□□ -2.05
SDC1P18827 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.23□□□□□ -2.05
SDC1P18827 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.23□□□□□ -2.05
SDC1P18827 AC003071.1-201ENST00000451219 789 ntBASIC2.23□□□□□ -2.05
SDC1P18827 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.23□□□□□ -2.05
SDC1P18827 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.23□□□□□ -2.05
SDC1P18827 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.23□□□□□ -2.05
SDC1P18827 AC234781.5-201ENST00000508429 271 ntBASIC2.23□□□□□ -2.05
SDC1P18827 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.23□□□□□ -2.05
SDC1P18827 RNU4-29P-201ENST00000515943 174 ntBASIC2.23□□□□□ -2.05
SDC1P18827 RNU6-445P-201ENST00000516949 107 ntBASIC2.23□□□□□ -2.05
SDC1P18827 RNU6-685P-201ENST00000517088 95 ntBASIC2.23□□□□□ -2.05
SDC1P18827 OR5AL2P-201ENST00000532185 920 ntBASIC2.23□□□□□ -2.05
SDC1P18827 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.23□□□□□ -2.05
SDC1P18827 MIR4446-201ENST00000578505 67 ntBASIC2.23□□□□□ -2.05
SDC1P18827 Z84480.1-201ENST00000605131 311 ntBASIC2.23□□□□□ -2.05
SDC1P18827 RN7SKP299-201ENST00000606679 301 ntBASIC2.23□□□□□ -2.05
SDC1P18827 AL160394.1-201ENST00000624765 724 ntBASIC2.23□□□□□ -2.05
SDC1P18827 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.23□□□□□ -2.05
SDC1P18827 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
SDC1P18827 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
SDC1P18827 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
SDC1P18827 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.22□□□□□ -2.05
SDC1P18827 MTND5P17-201ENST00000418405 1603 ntBASIC2.22□□□□□ -2.05
SDC1P18827 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.22□□□□□ -2.05
SDC1P18827 RNU6-1097P-201ENST00000363586 107 ntBASIC2.22□□□□□ -2.05
SDC1P18827 SNORA62.1-201ENST00000364287 154 ntBASIC2.22□□□□□ -2.05
SDC1P18827 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.22□□□□□ -2.05
SDC1P18827 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
SDC1P18827 Z92545.1-201ENST00000411782 234 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms