Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 HMGN2P15-201ENST00000585707 270 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AC110792.4-201ENST00000609843 298 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AC099842.1-201ENST00000619919 596 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.38□□□□□ -2.35
SPTA1P02549 SNORA50A-201ENST00000384225 134 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 RNU6-748P-201ENST00000384648 107 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 RNU2-49P-201ENST00000410666 184 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AC006461.1-201ENST00000412637 326 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.38□□□□□ -2.35
SPTA1P02549 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.38□□□□□ -2.35
SPTA1P02549 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.38□□□□□ -2.35
SPTA1P02549 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.38□□□□□ -2.35
SPTA1P02549 AC245102.2-201ENST00000448956 180 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 CYP2C59P-201ENST00000457790 269 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 OR52A4P-202ENST00000481634 799 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 SNORA31.18-201ENST00000517043 134 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 POLR2KP1-201ENST00000553226 168 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AL356432.3-201ENST00000568952 465 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AL139344.1-201ENST00000605228 195 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AL590410.1-201ENST00000617925 333 ntBASIC0.38□□□□□ -2.35
SPTA1P02549 AL359854.1-201ENST00000614203 1594 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 RNU4-73P-201ENST00000363164 141 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 RNU5D-1-201ENST00000363299 116 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AL589655.1-201ENST00000405398 482 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 RPP40P1-201ENST00000426762 456 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 Z82210.1-201ENST00000440037 231 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.37□□□□□ -2.35
SPTA1P02549 AC104164.3-201ENST00000467363 1258 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC109927.2-201ENST00000506416 303 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 RNU6-27P-201ENST00000516146 107 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 HMGB1P14-201ENST00000557424 591 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC011260.1-201ENST00000578420 472 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AL589743.7-201ENST00000612637 233 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC013470.4-201ENST00000619978 986 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 RNU6-1249P-201ENST00000363237 111 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 SNORA4.1-201ENST00000364263 144 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 BTF3L4P2-201ENST00000392798 346 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.37□□□□□ -2.35
SPTA1P02549 AL589880.1-201ENST00000448271 287 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AL096803.2-201ENST00000450032 677 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 AC147055.4-201ENST00000504399 745 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.37□□□□□ -2.35
SPTA1P02549 AC011406.1-201ENST00000512440 370 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.37□□□□□ -2.35
SPTA1P02549 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.37□□□□□ -2.35
SPTA1P02549 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.37□□□□□ -2.35
SPTA1P02549 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.37□□□□□ -2.35
SPTA1P02549 AC010615.3-201ENST00000597319 394 ntBASIC0.37□□□□□ -2.35
SPTA1P02549 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.37□□□□□ -2.35
SPTA1P02549 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
SPTA1P02549 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
SPTA1P02549 SNORD82-201ENST00000365530 70 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 Y_RNA.453-201ENST00000384223 109 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 MIR608-201ENST00000384820 100 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AL139098.1-201ENST00000407291 389 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 RNU4-78P-201ENST00000410940 126 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC241584.1-201ENST00000438469 1241 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 GTF2IP13-201ENST00000438487 386 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AC097499.1-201ENST00000444277 208 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AL358794.1-201ENST00000445689 381 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.36□□□□□ -2.35
SPTA1P02549 RNU6-775P-201ENST00000459318 96 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AC104629.2-201ENST00000468627 598 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.36□□□□□ -2.35
SPTA1P02549 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC0.36□□□□□ -2.35
SPTA1P02549 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.36□□□□□ -2.35
SPTA1P02549 AL359212.1-201ENST00000556608 614 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC007349.4-201ENST00000608114 532 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 uc_338.17-201ENST00000619633 179 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.36□□□□□ -2.35
SPTA1P02549 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
SPTA1P02549 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.36□□□□□ -2.35
SPTA1P02549 Y_RNA.35-201ENST00000362601 101 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 RNY4P24-201ENST00000362735 96 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 RNU6-989P-201ENST00000362756 107 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
SPTA1P02549 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC013410.2-201ENST00000422627 201 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 MTCO2P20-201ENST00000437339 673 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC090115.3-201ENST00000553218 849 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.36□□□□□ -2.35
SPTA1P02549 AC022202.1-201ENST00000613515 211 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AP003072.5-201ENST00000623872 773 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 AL159152.1-201ENST00000635019 2587 ntBASIC0.36□□□□□ -2.35
SPTA1P02549 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.35□□□□□ -2.35
SPTA1P02549 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
SPTA1P02549 RNU6-270P-201ENST00000364131 105 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms