Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.37□□□□□ -2.03
SDC3O75056 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.37□□□□□ -2.03
SDC3O75056 AC009063.1-201ENST00000563342 702 ntBASIC2.37□□□□□ -2.03
SDC3O75056 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.37□□□□□ -2.03
SDC3O75056 CLIC4P2-201ENST00000601934 717 ntBASIC2.37□□□□□ -2.03
SDC3O75056 AL133173.2-201ENST00000614270 90 ntBASIC2.37□□□□□ -2.03
SDC3O75056 AL512643.1-201ENST00000635735 524 ntBASIC2.37□□□□□ -2.03
SDC3O75056 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SDC3O75056 AC103710.2-202ENST00000641454 2853 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AC069528.2-201ENST00000624849 1991 ntBASIC2.36□□□□□ -2.03
SDC3O75056 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SDC3O75056 RNY4P34-201ENST00000364779 95 ntBASIC2.36□□□□□ -2.03
SDC3O75056 SNORA4.3-201ENST00000365564 137 ntBASIC2.36□□□□□ -2.03
SDC3O75056 RNU6-19P-201ENST00000384718 107 ntBASIC2.36□□□□□ -2.03
SDC3O75056 MIR147B-201ENST00000390185 80 ntBASIC2.36□□□□□ -2.03
SDC3O75056 RNU6-220P-201ENST00000390919 107 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AC092809.3-201ENST00000415453 231 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AL135786.1-201ENST00000415892 214 ntBASIC2.36□□□□□ -2.03
SDC3O75056 MTND3P17-201ENST00000416968 344 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AC009518.2-201ENST00000418056 731 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC3O75056 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC3O75056 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC3O75056 AC073614.1-201ENST00000438690 650 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AC003071.1-201ENST00000451219 789 ntBASIC2.36□□□□□ -2.03
SDC3O75056 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC3O75056 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC3O75056 AC026436.1-201ENST00000510537 270 ntBASIC2.36□□□□□ -2.03
SDC3O75056 Y_RNA.689-201ENST00000516589 107 ntBASIC2.36□□□□□ -2.03
SDC3O75056 RNU6-1183P-201ENST00000517054 60 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC3O75056 AC087883.1-201ENST00000551882 391 ntBASIC2.36□□□□□ -2.03
SDC3O75056 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC3O75056 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.36□□□□□ -2.03
SDC3O75056 MIR1273C-201ENST00000578669 77 ntBASIC2.36□□□□□ -2.03
SDC3O75056 MIR4648-201ENST00000580107 72 ntBASIC2.36□□□□□ -2.03
SDC3O75056 MIR4765-201ENST00000585007 77 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC3O75056 AC090578.1-201ENST00000604955 591 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AL021997.1-201ENST00000605757 193 ntBASIC2.36□□□□□ -2.03
SDC3O75056 MIR15A-201ENST00000607334 83 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AL359547.2-201ENST00000615810 418 ntBASIC2.36□□□□□ -2.03
SDC3O75056 AL449363.1-201ENST00000617815 186 ntBASIC2.36□□□□□ -2.03
SDC3O75056 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
SDC3O75056 TEX21P-201ENST00000447107 1476 ntBASIC2.36□□□□□ -2.03
SDC3O75056 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
SDC3O75056 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC3O75056 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
SDC3O75056 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.36□□□□□ -2.03
SDC3O75056 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SDC3O75056 AC093536.2-201ENST00000565257 1406 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
SDC3O75056 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SDC3O75056 MTND5P30-201ENST00000452896 1731 ntBASIC2.35□□□□□ -2.03
SDC3O75056 RNA5SP456-201ENST00000364002 114 ntBASIC2.35□□□□□ -2.03
SDC3O75056 RNU1-100P-201ENST00000365255 165 ntBASIC2.35□□□□□ -2.03
SDC3O75056 MIR504-201ENST00000385065 83 ntBASIC2.35□□□□□ -2.03
SDC3O75056 BTF3P7-201ENST00000407097 488 ntBASIC2.35□□□□□ -2.03
SDC3O75056 USP9YP6-201ENST00000413550 854 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.35□□□□□ -2.03
SDC3O75056 Z98742.2-201ENST00000431564 187 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AL353706.1-201ENST00000436728 494 ntBASIC2.35□□□□□ -2.03
SDC3O75056 FABP5P14-201ENST00000437273 393 ntBASIC2.35□□□□□ -2.03
SDC3O75056 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SDC3O75056 snoU13.15-201ENST00000459407 104 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.35□□□□□ -2.03
SDC3O75056 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC3O75056 AC117522.1-201ENST00000509821 380 ntBASIC2.35□□□□□ -2.03
SDC3O75056 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC3O75056 SCARNA3-201ENST00000517097 143 ntBASIC2.35□□□□□ -2.03
SDC3O75056 RNA5SP402-201ENST00000517148 110 ntBASIC2.35□□□□□ -2.03
SDC3O75056 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
SDC3O75056 AC090572.1-201ENST00000519251 160 ntBASIC2.35□□□□□ -2.03
SDC3O75056 MTND2P38-201ENST00000522536 667 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC3O75056 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC3O75056 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC3O75056 AC091152.3-201ENST00000604227 325 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AL022154.1-201ENST00000604698 785 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AC073114.1-201ENST00000612027 490 ntBASIC2.35□□□□□ -2.03
SDC3O75056 AC022079.1-201ENST00000621546 602 ntBASIC2.35□□□□□ -2.03
SDC3O75056 MIR7157-201ENST00000635801 60 ntBASIC2.35□□□□□ -2.03
SDC3O75056 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
SDC3O75056 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
SDC3O75056 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
SDC3O75056 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
SDC3O75056 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
SDC3O75056 Z98749.2-208ENST00000381646 500 ntBASIC2.34□□□□□ -2.03
SDC3O75056 SNORA40C-201ENST00000391285 128 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC3O75056 AC114491.1-201ENST00000416095 246 ntBASIC2.34□□□□□ -2.03
SDC3O75056 PTGES3P4-201ENST00000426243 356 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.34□□□□□ -2.03
SDC3O75056 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.34□□□□□ -2.03
SDC3O75056 MTND2P4-201ENST00000445034 1004 ntBASIC2.34□□□□□ -2.03
SDC3O75056 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
SDC3O75056 AC092436.1-201ENST00000506450 503 ntBASIC2.34□□□□□ -2.03
SDC3O75056 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC3O75056 SCARNA24.1-201ENST00000516465 137 ntBASIC2.34□□□□□ -2.03
SDC3O75056 SNORA31.11-201ENST00000516528 139 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms