Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC11O43248 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC11O43248 FDX1P2-201ENST00000450769 375 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AL590639.1-201ENST00000456484 337 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 SCARNA18-201ENST00000459004 134 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AC107626.1-201ENST00000471084 183 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 MTND3P25-201ENST00000509243 135 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXC11O43248 RN7SKP272-201ENST00000516988 232 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AC090136.1-201ENST00000520009 240 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC11O43248 AL137161.1-201ENST00000532231 390 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 AC012119.1-201ENST00000603184 222 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AC091152.3-201ENST00000604227 325 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 MIR7106-201ENST00000612419 65 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC11O43248 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXC11O43248 CR381653.2-201ENST00000624041 768 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AL137790.1-201ENST00000634283 177 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC11O43248 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HOXC11O43248 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
HOXC11O43248 AC026241.1-201ENST00000517873 2142 ntBASIC3.13□□□□□ -1.91
HOXC11O43248 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HOXC11O43248 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC11O43248 AC004520.1-201ENST00000608362 1413 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC11O43248 AC073325.2-201ENST00000339545 159 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 RNU6-1215P-201ENST00000384441 102 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 MIR518D-201ENST00000385014 87 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AL590002.1-201ENST00000406554 418 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 RAP1BP3-201ENST00000407180 549 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC016831.2-201ENST00000417179 352 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC11O43248 AL139132.1-201ENST00000431587 344 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC11O43248 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC11O43248 AC012308.1-201ENST00000451232 178 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC006026.2-201ENST00000457376 180 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 snoU109.2-201ENST00000459316 135 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC117440.1-201ENST00000474107 571 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC11O43248 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC11O43248 MTAPP1-201ENST00000489154 819 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXC11O43248 AC079140.5-201ENST00000507882 310 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC11O43248 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC11O43248 AC114781.4-201ENST00000513707 639 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 Y_RNA.693-201ENST00000516641 110 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXC11O43248 MTND4P7-201ENST00000523876 130 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC11O43248 GLYCAM1-201ENST00000546596 285 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 AC073539.2-201ENST00000597113 165 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.12□□□□□ -1.91
HOXC11O43248 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC11O43248 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC11O43248 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC11O43248 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
HOXC11O43248 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC11O43248 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXC11O43248 RNU6-1083P-201ENST00000384022 107 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL21P3-201ENST00000395517 478 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL21P75-201ENST00000396599 483 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AL512633.1-201ENST00000399931 655 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL21P28-201ENST00000401418 483 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 FO393413.1-201ENST00000402892 195 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AL592114.1-201ENST00000403842 483 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPS4XP7-201ENST00000406274 780 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 UBE2V1P10-201ENST00000414685 269 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXC11O43248 PGBD4P6-201ENST00000421501 610 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXC11O43248 AL513043.1-201ENST00000439124 535 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC025750.2-201ENST00000442609 450 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXC11O43248 HIGD1AP2-201ENST00000446367 280 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 CACYBPP2-201ENST00000453625 678 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXC11O43248 AC146507.2-201ENST00000460608 476 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL21P39-201ENST00000463605 483 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL21P93-201ENST00000480465 489 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL9P33-201ENST00000484311 566 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC087190.1-201ENST00000484462 480 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC093591.1-201ENST00000491435 481 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 RPL21P16-201ENST00000495531 483 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 ACA59.2-201ENST00000517061 156 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXC11O43248 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms