Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 RNA5SP50-201ENST00000363731 107 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 Y_RNA.184-201ENST00000363884 108 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 Y_RNA.384-201ENST00000383909 102 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 MIR490-201ENST00000384865 128 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 VN1R36P-201ENST00000414936 291 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AL139396.1-201ENST00000421137 167 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 NDUFB1P2-201ENST00000449477 176 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC022493.1-201ENST00000492984 337 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 TBCAP3-201ENST00000512475 312 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 RNA5SP165-201ENST00000517142 115 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 GLYCAM1-201ENST00000546596 285 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 TRAV37-201ENST00000553906 342 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC034105.4-201ENST00000568304 277 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 MIR4795-201ENST00000584182 89 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 MIR3942-201ENST00000585264 109 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC023043.2-201ENST00000589678 1026 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AL355365.1-201ENST00000616480 294 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AC005183.1-201ENST00000603687 1979 ntBASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.79□□□□□ -1.8
LIMCH1Q9UPQ0 AL049781.1-201ENST00000623195 3585 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 RNU4-76P-201ENST00000364509 141 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-140P-201ENST00000384566 108 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 Y_RNA.535-201ENST00000384612 99 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 MIR23A-201ENST00000385245 73 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 RPS20P15-201ENST00000412792 311 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 UBE2D3P2-201ENST00000424409 445 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 HMGN2P31-201ENST00000432430 273 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 SNAP23P1-201ENST00000433229 246 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC092573.2-201ENST00000434546 243 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 MTND3P25-201ENST00000509243 135 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 RPL39P5-202ENST00000512505 151 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-566P-201ENST00000516790 107 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC093331.1-201ENST00000521474 169 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 CASP1P1-201ENST00000526345 212 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 MIR2682-201ENST00000580305 110 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 MIR3672-201ENST00000584290 82 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC113139.1-201ENST00000605049 239 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC004805.2-201ENST00000605382 482 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC073657.2-201ENST00000605661 303 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 MIR8058-201ENST00000615737 89 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 RMST_4.1-201ENST00000616886 107 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 AC027309.3-201ENST00000623419 351 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 MIR1302-1-201ENST00000637932 143 ntBASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIMCH1Q9UPQ0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.78□□□□□ -1.81
LIMCH1Q9UPQ0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.81
LIMCH1Q9UPQ0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-1252P-201ENST00000363054 104 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-266P-201ENST00000364225 107 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA62.3-201ENST00000365110 153 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-217P-201ENST00000384164 104 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 MIR325-201ENST00000385260 98 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AL360182.1-201ENST00000397433 468 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 FAT1P1-201ENST00000406588 507 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AL591034.1-201ENST00000407447 340 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AC074085.1-201ENST00000413598 418 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 GOT2P5-201ENST00000433995 546 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 BRK1P2-201ENST00000442875 223 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-277P-201ENST00000516272 106 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 MIR892C-201ENST00000516410 77 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 SNORA25.17-201ENST00000517184 124 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AC245166.1-201ENST00000521012 253 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 RNU6-323P-201ENST00000521915 107 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 HMGB1P14-201ENST00000557424 591 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 AC007151.1-201ENST00000572774 483 ntBASIC3.77□□□□□ -1.81
LIMCH1Q9UPQ0 MIR3186-201ENST00000577404 85 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms