Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 SNORA20.2-201ENST00000383922 131 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 RNU6-190P-201ENST00000384154 102 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 RNU6-1328P-201ENST00000410938 106 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 GAPDHP17-201ENST00000449858 1001 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AL033528.1-201ENST00000453780 140 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 SNRPFP4-201ENST00000456366 242 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 RNU5F-8P-201ENST00000515941 111 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 RNA5SP200-201ENST00000516360 103 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC009902.1-201ENST00000519351 183 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC025755.1-201ENST00000521306 278 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC084851.1-201ENST00000529105 249 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 OR4R1P-201ENST00000529879 463 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC009063.1-201ENST00000563342 702 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC137800.2-201ENST00000574375 120 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC008088.1-201ENST00000580993 280 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 MIR4513-201ENST00000581077 86 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 MIR4435-1-201ENST00000582552 80 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC174048.1-201ENST00000603389 144 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 Z99497.2-201ENST00000603634 310 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 Z94722.1-201ENST00000604328 474 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AL158032.1-201ENST00000605401 106 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 MIR15A-201ENST00000607334 83 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC011939.3-201ENST00000613686 466 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC064859.1-201ENST00000624741 174 ntBASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 RNU6-169P-201ENST00000365336 107 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 MIR558-201ENST00000384920 94 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AL445529.1-201ENST00000398713 389 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 RNU2-8P-201ENST00000410727 190 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC233279.1-201ENST00000455300 423 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 RNA5SP269-201ENST00000459032 137 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 snoU109.1-201ENST00000459339 135 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC073901.1-201ENST00000462471 408 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AL121769.1-201ENST00000469473 401 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC109927.2-201ENST00000506416 303 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC022447.1-201ENST00000515358 464 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 SCARNA16.3-201ENST00000516595 184 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 SNORA31.18-201ENST00000517043 134 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 RNU6-1183P-201ENST00000517054 60 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC006199.1-201ENST00000548728 219 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 SNRPGP18-201ENST00000553000 214 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC091544.4-201ENST00000555268 342 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC073114.1-201ENST00000612027 490 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AL589743.7-201ENST00000612637 233 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 AC022079.1-201ENST00000621546 602 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 MIR6873-201ENST00000622788 63 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 PISRT1-201ENST00000626175 531 ntBASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS54Q9P1Q0 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 RNY1P12-201ENST00000364251 105 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AC009518.2-201ENST00000418056 731 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AL591704.1-201ENST00000432574 275 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AC009961.2-201ENST00000435771 251 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 BRK1P2-201ENST00000442875 223 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AL118520.1-201ENST00000450770 291 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms