Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU1-124P-201ENST00000363861 145 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AC106901.1-201ENST00000425086 698 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AC091489.2-201ENST00000566263 604 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 SNORA4.1-201ENST00000364263 144 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AL136372.1-201ENST00000403060 228 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 RPL22P18-201ENST00000417197 377 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 RPL21P103-201ENST00000479921 488 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 RNU6-362P-201ENST00000516736 90 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AC107953.1-201ENST00000522216 297 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 OR5AK1P-201ENST00000524837 922 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AL157871.3-201ENST00000557231 293 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AC023824.2-201ENST00000566185 400 ntBASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC-0.13□□□□□ -2.43
VPS13AQ96RL7 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 snoU13.25-201ENST00000458945 104 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RAP1BP2-201ENST00000478270 544 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RNU7-193P-201ENST00000516723 65 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC087897.1-201ENST00000550134 156 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 MIR3117-201ENST00000584034 78 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AL355812.1-201ENST00000603215 216 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RN7SKP12-201ENST00000516275 143 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RNA5SP134-201ENST00000516492 96 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC112487.2-201ENST00000637950 304 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC023934.1-201ENST00000574529 2389 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RNA5SP128-201ENST00000365305 116 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 MTCO3P45-201ENST00000443036 613 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 MTND4P19-201ENST00000446659 478 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 BET1P1-201ENST00000482276 359 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 HMGB1P29-201ENST00000505659 499 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RNU6-138P-201ENST00000515952 107 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 AC015726.3-201ENST00000624501 418 ntBASIC-0.14□□□□□ -2.43
VPS13AQ96RL7 RPL31P3-201ENST00000458430 332 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 COX6CP6-201ENST00000490840 228 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AC147055.4-201ENST00000504399 745 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AL136363.1-201ENST00000605349 337 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AL513185.3-201ENST00000433335 1300 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 RPS27AP8-201ENST00000452665 445 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 MTND1P16-201ENST00000465177 898 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 RNU7-40P-201ENST00000516397 64 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 XIAPP1-201ENST00000603162 600 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 AC027335.2-201ENST00000624030 375 ntBASIC-0.15□□□□□ -2.43
VPS13AQ96RL7 MTCO2P8-201ENST00000412213 658 ntBASIC-0.16□□□□□ -2.43
VPS13AQ96RL7 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC-0.16□□□□□ -2.43
VPS13AQ96RL7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC-0.16□□□□□ -2.43
VPS13AQ96RL7 AP005902.1-201ENST00000521358 186 ntBASIC-0.16□□□□□ -2.43
VPS13AQ96RL7 AC007751.1-201ENST00000529260 376 ntBASIC-0.16□□□□□ -2.43
VPS13AQ96RL7 LINC02211-204ENST00000642024 1070 ntBASIC-0.16□□□□□ -2.43
VPS13AQ96RL7 HMGN2P16-201ENST00000456802 261 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 AC093913.1-201ENST00000614178 329 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 AL589935.2-201ENST00000616471 1231 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 MIR6134-201ENST00000617606 109 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 FARSBP1-201ENST00000435808 1778 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 SNORA36.1-201ENST00000363424 132 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 RNU6-302P-201ENST00000365249 107 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 AL132822.1-201ENST00000617063 513 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 AL512506.2-201ENST00000624472 458 ntBASIC-0.16□□□□□ -2.44
VPS13AQ96RL7 MORN2-203ENST00000409131 544 ntTSL 5 BASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 RNU2-63P-201ENST00000410792 194 ntBASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 PART1_2.1-201ENST00000612397 250 ntBASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 AC090132.2-201ENST00000615881 347 ntBASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 AL161423.1-201ENST00000613700 262 ntBASIC-0.17□□□□□ -2.44
VPS13AQ96RL7 SNORA32.1-201ENST00000364514 115 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 RPL18AP17-201ENST00000455326 198 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 SNORA31.18-201ENST00000517043 134 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 SNORA16.2-201ENST00000390991 127 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC092634.6-201ENST00000418558 192 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 RPS15AP5-201ENST00000436276 388 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC245047.7-201ENST00000440265 293 ntBASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC-0.18□□□□□ -2.44
VPS13AQ96RL7 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms