Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.09□□□□□ -1.91
USP43Q70EL4 MTCYBP40-201ENST00000509390 1135 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AC004062.1-201ENST00000509926 645 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 RNU4-29P-201ENST00000515943 174 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 RNA5SP217-201ENST00000515959 91 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 Y_RNA.682-201ENST00000516457 100 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 SCARNA14-201ENST00000516903 136 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.09□□□□□ -1.91
USP43Q70EL4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.09□□□□□ -1.91
USP43Q70EL4 OR4K8P-201ENST00000578842 1048 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 MIR3690-201ENST00000580266 75 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 MIR4424-201ENST00000585257 86 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.09□□□□□ -1.91
USP43Q70EL4 AC007566.2-201ENST00000603642 413 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AC016727.2-201ENST00000603988 621 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.09□□□□□ -1.91
USP43Q70EL4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 ZNF519P1-201ENST00000449011 1626 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP43Q70EL4 ZNF807-201ENST00000328088 1707 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 MTND5P19-201ENST00000424872 1794 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP43Q70EL4 Y_RNA.176-201ENST00000363815 109 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 RNU6-335P-201ENST00000364563 113 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 SNORD82-201ENST00000365530 70 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 RNU6-209P-201ENST00000384118 107 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 SNORA26.7-201ENST00000391288 122 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.08□□□□□ -1.92
USP43Q70EL4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.08□□□□□ -1.92
USP43Q70EL4 RPL32P35-201ENST00000415214 394 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 RPL7P10-201ENST00000417407 739 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AL139281.1-201ENST00000422120 335 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.08□□□□□ -1.92
USP43Q70EL4 SKA2P1-201ENST00000425592 390 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.08□□□□□ -1.92
USP43Q70EL4 MED13P1-201ENST00000428342 171 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AL159987.2-201ENST00000432754 307 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.08□□□□□ -1.92
USP43Q70EL4 AC104058.1-201ENST00000448028 297 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 CYCSP35-201ENST00000451978 304 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 RPS26P21-201ENST00000475397 348 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 RPL23AP55-201ENST00000498163 452 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 HMGB3P17-201ENST00000504195 649 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 RNU1-143P-201ENST00000516296 146 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC009812.2-201ENST00000517657 457 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 IGKV2D-36-201ENST00000518643 226 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC009902.1-201ENST00000519351 183 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC103843.2-201ENST00000530523 682 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP43Q70EL4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.08□□□□□ -1.92
USP43Q70EL4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.08□□□□□ -1.92
USP43Q70EL4 MIR4775-201ENST00000581168 75 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AF038458.1-201ENST00000588406 262 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.08□□□□□ -1.92
USP43Q70EL4 SNRPGP15-201ENST00000600149 222 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC025588.3-201ENST00000604182 274 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC018889.1-201ENST00000605372 397 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 PRR13P7-201ENST00000605538 430 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 U1.23-201ENST00000610293 146 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC083806.3-201ENST00000614016 455 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC130324.3-201ENST00000614165 542 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.08□□□□□ -1.92
USP43Q70EL4 RNU1-68P-201ENST00000615382 146 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC007485.1-201ENST00000616755 206 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AL162373.1-201ENST00000620433 407 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC098657.3-201ENST00000620434 263 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AC078938.1-201ENST00000620993 318 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 U1.39-201ENST00000621562 146 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP43Q70EL4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.08□□□□□ -1.92
USP43Q70EL4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.08□□□□□ -1.92
USP43Q70EL4 PABPC1P7-201ENST00000413177 1513 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP43Q70EL4 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.08□□□□□ -1.92
USP43Q70EL4 MTND5P30-201ENST00000452896 1731 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
USP43Q70EL4 AL356274.2-201ENST00000624379 3752 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP43Q70EL4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.07□□□□□ -1.92
USP43Q70EL4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP43Q70EL4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP43Q70EL4 HSPE1P11-201ENST00000339579 310 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 U3.6-201ENST00000363622 211 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 U8.9-201ENST00000365667 134 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 MIR634-201ENST00000385208 97 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
USP43Q70EL4 RNU6-903P-201ENST00000391270 109 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.07□□□□□ -1.92
USP43Q70EL4 RNU4-26P-201ENST00000410270 107 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 RNU2-36P-201ENST00000410361 191 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 RN7SKP53-201ENST00000411337 315 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 RNU2-71P-201ENST00000411395 189 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 BX323014.1-201ENST00000412876 237 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 MTATP6P29-201ENST00000415057 132 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 MTCYBP10-201ENST00000424905 650 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 RPL7P46-201ENST00000425129 740 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 FABP5P14-201ENST00000437273 393 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 AC127537.2-201ENST00000439258 465 ntBASIC3.07□□□□□ -1.92
USP43Q70EL4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms