Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC108078.1-201ENST00000508073 725 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.1□□□□□ -2.23
USP54Q70EL1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.1□□□□□ -2.23
USP54Q70EL1 AC098591.2-201ENST00000510152 315 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AC093752.1-206ENST00000511823 336 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USP54Q70EL1 MTCYBP23-201ENST00000558717 1102 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.1□□□□□ -2.23
USP54Q70EL1 AL138963.2-201ENST00000605137 226 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.1□□□□□ -2.23
USP54Q70EL1 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.09□□□□□ -2.23
USP54Q70EL1 HAUS6P2-201ENST00000433254 2404 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
USP54Q70EL1 Y_RNA.178-201ENST00000363832 102 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 Y_RNA.258-201ENST00000364613 105 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 RNU6-716P-201ENST00000365621 103 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 NDUFS5P4-201ENST00000412983 318 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.09□□□□□ -2.24
USP54Q70EL1 AC098831.1-201ENST00000440661 216 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.09□□□□□ -2.24
USP54Q70EL1 AL096803.2-201ENST00000450032 677 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.09□□□□□ -2.24
USP54Q70EL1 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC1.09□□□□□ -2.24
USP54Q70EL1 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.09□□□□□ -2.24
USP54Q70EL1 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.09□□□□□ -2.24
USP54Q70EL1 AC093510.2-201ENST00000562820 896 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 AL590095.2-201ENST00000604136 117 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 AL589743.7-201ENST00000612637 233 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 AC104763.3-201ENST00000613765 618 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 AC092192.1-201ENST00000633154 1018 ntBASIC1.09□□□□□ -2.24
USP54Q70EL1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.08□□□□□ -2.24
USP54Q70EL1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
USP54Q70EL1 AC110491.1-201ENST00000562191 2010 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 RNU2-49P-201ENST00000410666 184 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 RNU2-63P-201ENST00000410792 194 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 UBE2FP1-201ENST00000416536 447 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AC244453.4-201ENST00000419150 388 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AC246680.2-201ENST00000422106 389 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AC244035.1-201ENST00000430042 390 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.08□□□□□ -2.24
USP54Q70EL1 NANOGP2-201ENST00000435391 727 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 MTND6P13-201ENST00000443510 523 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.08□□□□□ -2.24
USP54Q70EL1 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.08□□□□□ -2.24
USP54Q70EL1 AL049874.1-201ENST00000489560 388 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.08□□□□□ -2.24
USP54Q70EL1 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.08□□□□□ -2.24
USP54Q70EL1 RNA5SP112-201ENST00000515937 99 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC1.08□□□□□ -2.24
USP54Q70EL1 AC006199.1-201ENST00000548728 219 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AL132857.1-201ENST00000555180 708 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 BNIP3P25-201ENST00000596023 559 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AL671309.1-201ENST00000603750 544 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AL360085.1-201ENST00000604713 532 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 AC024581.2-201ENST00000619986 252 ntBASIC1.08□□□□□ -2.24
USP54Q70EL1 RNU6-37P-201ENST00000362692 107 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 RNU6-11P-201ENST00000364234 107 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 SNORD116-23-201ENST00000384645 92 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.07□□□□□ -2.24
USP54Q70EL1 AC234064.1-201ENST00000436312 247 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.07□□□□□ -2.24
USP54Q70EL1 AC027575.1-201ENST00000481064 460 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AL160314.1-201ENST00000490836 438 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 HMGB1P35-201ENST00000503360 598 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.07□□□□□ -2.24
USP54Q70EL1 AL031274.2-201ENST00000599419 203 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 PRR13P7-201ENST00000605538 430 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC024257.5-201ENST00000612739 531 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC013476.2-201ENST00000614456 459 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 U6.101-201ENST00000637707 76 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
USP54Q70EL1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 Y_RNA.251-201ENST00000364551 99 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AL449283.1-202ENST00000418249 604 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.07□□□□□ -2.24
USP54Q70EL1 PPP1R11P2-201ENST00000423543 382 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 MTND2P5-201ENST00000432656 1006 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC008834.1-201ENST00000511612 175 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.07□□□□□ -2.24
USP54Q70EL1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.07□□□□□ -2.24
USP54Q70EL1 NIFKP8-201ENST00000560500 874 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 MIR3198-2-201ENST00000577868 80 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AL138478.1-201ENST00000612252 832 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 AC080188.3-201ENST00000624842 748 ntBASIC1.07□□□□□ -2.24
USP54Q70EL1 RNU6-1066P-201ENST00000363573 105 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 SNORD115-48-201ENST00000364764 76 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.06□□□□□ -2.24
USP54Q70EL1 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC1.06□□□□□ -2.24
USP54Q70EL1 CCNG1P1-201ENST00000406783 885 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.06□□□□□ -2.24
USP54Q70EL1 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.06□□□□□ -2.24
USP54Q70EL1 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.06□□□□□ -2.24
USP54Q70EL1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.06□□□□□ -2.24
USP54Q70EL1 TPT1P8-201ENST00000510120 555 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 FAM206BP-201ENST00000510179 541 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 AC021739.1-201ENST00000559631 174 ntBASIC1.06□□□□□ -2.24
USP54Q70EL1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms