Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ELOCP5-201ENST00000604924 333 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AP003400.6-201ENST00000624698 740 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AL136313.1-201ENST00000624804 202 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.53□□□□□ -2.33
CHD9Q3L8U1 RNU1-23P-201ENST00000363361 144 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 RNU6-921P-201ENST00000384361 107 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AL355615.1-201ENST00000406187 641 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC010385.1-201ENST00000412374 256 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 ZNF863P-201ENST00000426746 417 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 PTENP1-201ENST00000447117 1215 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC025459.1-201ENST00000504072 156 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC023932.2-201ENST00000603176 175 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 HMGB1P51-201ENST00000605166 638 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AL022345.1-201ENST00000607292 135 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC073968.1-201ENST00000618594 637 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AP000776.1-201ENST00000530032 1663 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 Y_RNA.18-201ENST00000362461 102 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 RNU5A-1-201ENST00000362698 116 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 RNU6-748P-201ENST00000384648 107 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 MIR525-201ENST00000384978 85 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC007151.1-201ENST00000572774 483 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 AC012669.1-201ENST00000603209 283 ntBASIC0.52□□□□□ -2.33
CHD9Q3L8U1 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC0.52□□□□□ -2.33
CHD9Q3L8U1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 RNU6-444P-201ENST00000383988 108 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 MORN2-203ENST00000409131 544 ntTSL 5 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AL133384.1-201ENST00000412744 351 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 MTCO3P2-201ENST00000457365 171 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 RNU4-77P-201ENST00000516692 156 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 RNU7-193P-201ENST00000516723 65 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 RNU6-928P-201ENST00000516876 104 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC090888.1-201ENST00000561335 1141 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC131280.1-202ENST00000624067 4211 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC009310.1-201ENST00000414414 451 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 BPY2DP-201ENST00000422208 265 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC092047.1-201ENST00000424997 240 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 OR52A4P-202ENST00000481634 799 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 HMGB1P36-201ENST00000487709 576 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC091435.1-201ENST00000505442 584 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC109927.2-201ENST00000506416 303 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC005668.1-201ENST00000571142 476 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC002545.1-201ENST00000592511 181 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AP000654.2-201ENST00000605633 586 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC004908.3-201ENST00000610248 625 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC090132.2-201ENST00000615881 347 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 RNU4-23P-201ENST00000362839 140 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 FTH1P15-201ENST00000406984 280 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 RNA5SP25-201ENST00000410815 110 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AL392003.1-201ENST00000434394 243 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.51□□□□□ -2.33
CHD9Q3L8U1 SCARNA1-201ENST00000517138 166 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC027104.1-201ENST00000563702 681 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 MIR3198-2-201ENST00000577868 80 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AL669831.4-202ENST00000590817 238 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AP003399.1-201ENST00000637534 361 ntBASIC0.51□□□□□ -2.33
CHD9Q3L8U1 AC008163.1-202ENST00000636004 2889 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 MIR126-201ENST00000362291 85 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 SNORD51-201ENST00000384320 80 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC244453.4-201ENST00000419150 388 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC246680.2-201ENST00000422106 389 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC245102.2-201ENST00000448956 180 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 MRPS17P3-201ENST00000465453 385 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC087884.1-201ENST00000469738 328 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 RPS27P23-201ENST00000487608 251 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC121161.1-201ENST00000510606 652 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.5□□□□□ -2.33
CHD9Q3L8U1 HIGD1AP6-201ENST00000521833 279 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 MIR4653-201ENST00000585107 83 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC092192.1-201ENST00000633154 1018 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AL391516.1-201ENST00000554380 2449 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 MTND4LP10-201ENST00000435146 291 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC0.5□□□□□ -2.33
CHD9Q3L8U1 RPL32P14-201ENST00000463196 378 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC006512.1-201ENST00000468816 291 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC021146.2-201ENST00000504736 556 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC098862.1-201ENST00000504991 413 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AC009268.1-201ENST00000561352 1203 ntBASIC0.5□□□□□ -2.33
CHD9Q3L8U1 AGGF1P5-201ENST00000567900 919 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms