Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RN7SL585P-201ENST00000470538 280 ntBASIC4.42□□□□□ -1.7
LIG3P49916 SNORA25.11-201ENST00000515935 105 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RNU6-1143P-201ENST00000516125 104 ntBASIC4.42□□□□□ -1.7
LIG3P49916 SNORA40.15-201ENST00000516884 107 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RNA5SP143-201ENST00000516936 115 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AC091144.1-201ENST00000519573 138 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AL590705.4-201ENST00000532209 134 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.42□□□□□ -1.7
LIG3P49916 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG3P49916 HSPE1P5-201ENST00000561489 272 ntBASIC4.42□□□□□ -1.7
LIG3P49916 ZNF192P1-203ENST00000565888 810 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AC023575.1-201ENST00000580510 358 ntBASIC4.42□□□□□ -1.7
LIG3P49916 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG3P49916 AC079587.1-201ENST00000603846 277 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AL160290.3-201ENST00000604869 165 ntBASIC4.42□□□□□ -1.7
LIG3P49916 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
LIG3P49916 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG3P49916 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LIG3P49916 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.41□□□□□ -1.7
LIG3P49916 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG3P49916 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.41□□□□□ -1.7
LIG3P49916 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG3P49916 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
LIG3P49916 MIR331-201ENST00000362302 94 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNU6-379P-201ENST00000363813 104 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNU6-336P-201ENST00000364891 107 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNU6-784P-201ENST00000384330 106 ntBASIC4.41□□□□□ -1.7
LIG3P49916 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG3P49916 AL138878.1-201ENST00000405131 347 ntBASIC4.41□□□□□ -1.7
LIG3P49916 Y_RNA.592-201ENST00000410274 109 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNA5SP494-201ENST00000410653 129 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RN7SKP58-201ENST00000411010 305 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNU2-71P-201ENST00000411395 189 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AL356968.1-201ENST00000416622 474 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.41□□□□□ -1.7
LIG3P49916 AL356535.1-201ENST00000440335 398 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AC079354.2-201ENST00000453523 154 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RN7SKP210-201ENST00000459176 261 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RPS29P27-201ENST00000463711 170 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RN7SL385P-201ENST00000468873 276 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RN7SL303P-201ENST00000469773 251 ntBASIC4.41□□□□□ -1.7
LIG3P49916 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.41□□□□□ -1.7
LIG3P49916 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.41□□□□□ -1.7
LIG3P49916 AC008958.1-201ENST00000511047 682 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNU2-53P-201ENST00000516257 147 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RNU6-1282P-201ENST00000516735 96 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.41□□□□□ -1.7
LIG3P49916 AC125232.2-201ENST00000592457 143 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AC078899.3-201ENST00000599065 212 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AC113403.1-201ENST00000604910 193 ntBASIC4.41□□□□□ -1.7
LIG3P49916 RAC1P9-201ENST00000604990 392 ntBASIC4.41□□□□□ -1.7
LIG3P49916 uc_338.13-201ENST00000618243 179 ntBASIC4.41□□□□□ -1.7
LIG3P49916 AL159153.1-201ENST00000619688 317 ntBASIC4.41□□□□□ -1.7
LIG3P49916 MIR6830-201ENST00000636015 70 ntBASIC4.41□□□□□ -1.7
LIG3P49916 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIG3P49916 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.41□□□□□ -1.7
LIG3P49916 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
LIG3P49916 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.41□□□□□ -1.7
LIG3P49916 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG3P49916 AC008725.1-201ENST00000605123 2263 ntBASIC4.41□□□□□ -1.7
LIG3P49916 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.4□□□□□ -1.7
LIG3P49916 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.7
LIG3P49916 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.4□□□□□ -1.7
LIG3P49916 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIG3P49916 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIG3P49916 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.4□□□□□ -1.7
LIG3P49916 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIG3P49916 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
LIG3P49916 FTLP6-201ENST00000355274 422 ntBASIC4.4□□□□□ -1.71
LIG3P49916 SNORA31-201ENST00000362607 130 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIG3P49916 AC068538.1-201ENST00000376856 336 ntBASIC4.4□□□□□ -1.71
LIG3P49916 MIR1302-6-201ENST00000408466 90 ntBASIC4.4□□□□□ -1.71
LIG3P49916 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.4□□□□□ -1.71
LIG3P49916 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.4□□□□□ -1.71
LIG3P49916 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.4□□□□□ -1.71
LIG3P49916 FCF1P4-201ENST00000448326 183 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AC006026.2-201ENST00000457376 180 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.4□□□□□ -1.71
LIG3P49916 AC109327.1-201ENST00000471666 403 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AL132838.2-201ENST00000492041 314 ntBASIC4.4□□□□□ -1.71
LIG3P49916 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.4□□□□□ -1.71
LIG3P49916 RNU6-408P-201ENST00000515910 100 ntBASIC4.4□□□□□ -1.71
LIG3P49916 RNA5SP468-201ENST00000516782 93 ntBASIC4.4□□□□□ -1.71
LIG3P49916 RNU6-703P-201ENST00000516946 107 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.4□□□□□ -1.71
LIG3P49916 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.4□□□□□ -1.71
LIG3P49916 AC064801.1-201ENST00000612025 407 ntBASIC4.4□□□□□ -1.71
LIG3P49916 MIR486-1-201ENST00000612171 68 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AC114781.5-201ENST00000615297 108 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AC090617.7-201ENST00000623952 126 ntBASIC4.4□□□□□ -1.71
LIG3P49916 AC007546.2-201ENST00000623996 360 ntBASIC4.4□□□□□ -1.71
LIG3P49916 U6.104-201ENST00000637979 90 ntBASIC4.4□□□□□ -1.71
LIG3P49916 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIG3P49916 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LIG3P49916 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.4□□□□□ -1.71
LIG3P49916 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.39□□□□□ -1.71
LIG3P49916 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIG3P49916 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
LIG3P49916 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms