Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RPL32P28-201ENST00000443577 397 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD9P28356 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD9P28356 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD9P28356 FABP5P13-201ENST00000452144 328 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC109925.1-201ENST00000478069 331 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC090096.1-201ENST00000489168 390 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD9P28356 RNU2-69P-201ENST00000516061 100 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 SNORA14.1-201ENST00000516113 141 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 RNU6-1069P-201ENST00000516612 133 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 Y_RNA.711-201ENST00000516993 102 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD9P28356 NDUFB9P3-201ENST00000521269 501 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD9P28356 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD9P28356 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD9P28356 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXD9P28356 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXD9P28356 MIR4644-201ENST00000579929 84 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC006504.6-201ENST00000590142 199 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AL355802.3-201ENST00000607571 545 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC022893.3-201ENST00000607665 437 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 U2.17-201ENST00000611454 95 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 DUSP12P1-201ENST00000612874 516 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AL110115.1-201ENST00000614396 364 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 MTND5P42-201ENST00000637720 498 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD9P28356 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
HOXD9P28356 HSPA8P1-201ENST00000425843 1833 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 AC009812.4-201ENST00000569134 1805 ntBASIC3.35□□□□□ -1.87
HOXD9P28356 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD9P28356 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD9P28356 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD9P28356 AC007256.1-201ENST00000392253 2765 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD9P28356 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXD9P28356 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXD9P28356 RNU6-1188P-201ENST00000363795 107 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 Y_RNA.197-201ENST00000364004 102 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RNU6-1160P-201ENST00000384546 104 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 MIR450B-201ENST00000401182 78 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AL591034.1-201ENST00000407447 340 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RNU6-370P-201ENST00000411008 104 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RPLP0P7-201ENST00000416050 667 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD9P28356 RPL23AP69-201ENST00000431134 458 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD9P28356 ELOCP24-201ENST00000456370 334 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AC108860.1-201ENST00000484521 383 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AL163540.1-201ENST00000485382 386 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RPS27P27-201ENST00000498779 255 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD9P28356 AC104136.1-201ENST00000512969 394 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RNU6-677P-201ENST00000516914 101 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RNU6-273P-201ENST00000516937 96 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD9P28356 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD9P28356 AC011602.1-201ENST00000546484 331 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD9P28356 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD9P28356 AC138761.3-201ENST00000579993 334 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD9P28356 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 AL158032.1-201ENST00000605401 106 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD9P28356 AP002826.1-201ENST00000608835 315 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 RMST_8.1-201ENST00000610287 165 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 uc_338.1-201ENST00000612113 180 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 FAM157A-202ENST00000615155 405 ntBASIC3.34□□□□□ -1.87
HOXD9P28356 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD9P28356 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD9P28356 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.87
HOXD9P28356 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD9P28356 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
HOXD9P28356 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.34□□□□□ -1.88
HOXD9P28356 ZNF519P1-201ENST00000449011 1626 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD9P28356 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.33□□□□□ -1.88
HOXD9P28356 HSPA8P4-201ENST00000511877 1920 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HOXD9P28356 RNA5SP295-201ENST00000362655 121 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 Y_RNA.146-201ENST00000363549 102 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 RNU6-715P-201ENST00000365204 103 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 SNORA33.2-201ENST00000365413 134 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 RNU6-190P-201ENST00000384154 102 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 MIR23A-201ENST00000385245 73 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 MTATP6P4-201ENST00000427725 675 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 SNAP23P1-201ENST00000433229 246 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 AL353705.1-201ENST00000433468 480 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 RNU6-953P-201ENST00000459154 107 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC008526.1-201ENST00000509149 338 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms