Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL139344.1-201ENST00000605228 195 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC012443.1-201ENST00000605605 231 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC087683.2-201ENST00000611384 326 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AC021755.4-201ENST00000616620 456 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AL356585.4-201ENST00000623078 1229 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.52□□□□□ -2.17
COL5A3P25940 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 AC008993.2-201ENST00000631744 806 ntBASIC1.52□□□□□ -2.17
COL5A3P25940 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.52□□□□□ -2.17
COL5A3P25940 MTND5P10-201ENST00000603719 1809 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 RNU5D-1-201ENST00000363299 116 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 MIR493-201ENST00000385254 89 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL356421.1-201ENST00000403255 413 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL356131.1-201ENST00000405826 414 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 RNU6-757P-201ENST00000410334 100 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.51□□□□□ -2.17
COL5A3P25940 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AC011233.1-201ENST00000422812 283 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL593851.1-201ENST00000426171 157 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AC024082.2-201ENST00000434771 238 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL354941.1-201ENST00000438600 464 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 MTND5P14-201ENST00000441481 1267 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 RNU6-420P-201ENST00000458780 107 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL135752.1-201ENST00000479477 471 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 RN7SKP287-201ENST00000516546 266 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AC022861.1-201ENST00000522981 663 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AP000907.2-201ENST00000530827 353 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.51□□□□□ -2.17
COL5A3P25940 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
COL5A3P25940 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AC087465.1-201ENST00000560574 245 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.51□□□□□ -2.17
COL5A3P25940 AC007229.1-201ENST00000590455 412 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 NUTF2P8-201ENST00000604593 363 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL162373.1-201ENST00000620433 407 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 AL390862.1-201ENST00000635467 1469 ntBASIC1.51□□□□□ -2.17
COL5A3P25940 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.5□□□□□ -2.17
COL5A3P25940 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
COL5A3P25940 RNU6-157P-201ENST00000383957 107 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 AC092047.1-201ENST00000424997 240 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.5□□□□□ -2.17
COL5A3P25940 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.5□□□□□ -2.17
COL5A3P25940 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 snoU13.28-201ENST00000459235 104 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.5□□□□□ -2.17
COL5A3P25940 BZW1P2-201ENST00000473537 826 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 AC023790.1-201ENST00000482174 347 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.5□□□□□ -2.17
COL5A3P25940 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 CASP1P1-201ENST00000526345 212 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC1.5□□□□□ -2.17
COL5A3P25940 AC090897.2-201ENST00000581715 130 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 BBIP1P1-201ENST00000602999 279 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 AC097468.3-201ENST00000607956 456 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 AC040168.1-201ENST00000623594 991 ntBASIC1.5□□□□□ -2.17
COL5A3P25940 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.5□□□□□ -2.17
COL5A3P25940 AL022578.1-201ENST00000439330 1433 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RNU6-28P-201ENST00000362378 107 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RNU6-723P-201ENST00000383973 107 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 Y_RNA.560-201ENST00000384689 102 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RNU6-882P-201ENST00000391025 103 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 SNORD23.1-201ENST00000408212 104 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 HMGN1P14-201ENST00000412459 517 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 MTATP6P27-201ENST00000416987 621 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RPL31P63-201ENST00000422565 375 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL139421.1-201ENST00000423010 169 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 VN1R108P-201ENST00000431580 830 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 UBE2D3P4-201ENST00000441973 436 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL078601.1-201ENST00000444542 271 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 RAC1P7-201ENST00000445367 377 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL606662.1-201ENST00000445763 553 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 ANKRD26P4-201ENST00000455755 950 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC022483.1-201ENST00000514020 567 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 SNORA31.23-201ENST00000517219 133 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.49□□□□□ -2.17
COL5A3P25940 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.49□□□□□ -2.17
COL5A3P25940 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL5A3P25940 SETP7-201ENST00000552169 453 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 MTND3P12-201ENST00000559068 328 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC105224.1-201ENST00000587055 421 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 VN1R82P-201ENST00000601481 356 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 HSPE1P7-201ENST00000604681 321 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL136363.1-201ENST00000605349 337 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC093838.1-201ENST00000613014 469 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC122133.1-201ENST00000613964 233 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.49□□□□□ -2.17
COL5A3P25940 AL357080.1-201ENST00000617394 239 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AL031667.3-201ENST00000620124 655 ntBASIC1.49□□□□□ -2.17
COL5A3P25940 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.49□□□□□ -2.17
COL5A3P25940 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.49□□□□□ -2.17
COL5A3P25940 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms