Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL670379.1-201ENST00000604752 252 ntBASIC2.57□□□□□ -2
HOXD4P09016 AL670379.5-201ENST00000605253 252 ntBASIC2.57□□□□□ -2
HOXD4P09016 AL670379.12-201ENST00000605291 253 ntBASIC2.57□□□□□ -2
HOXD4P09016 AL670379.8-201ENST00000605353 252 ntBASIC2.57□□□□□ -2
HOXD4P09016 AL670379.7-201ENST00000605823 252 ntBASIC2.57□□□□□ -2
HOXD4P09016 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
HOXD4P09016 MIR1321-201ENST00000637766 79 ntBASIC2.57□□□□□ -2
HOXD4P09016 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.57□□□□□ -2
HOXD4P09016 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.57□□□□□ -2
HOXD4P09016 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
HOXD4P09016 AC010680.1-201ENST00000590024 3590 ntBASIC2.56□□□□□ -2
HOXD4P09016 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.56□□□□□ -2
HOXD4P09016 SNORA62.1-201ENST00000364287 154 ntBASIC2.56□□□□□ -2
HOXD4P09016 RNA5SP139-201ENST00000364340 117 ntBASIC2.56□□□□□ -2
HOXD4P09016 RNU4-48P-201ENST00000365559 182 ntBASIC2.56□□□□□ -2
HOXD4P09016 CD24P4-201ENST00000382840 243 ntBASIC2.56□□□□□ -2
HOXD4P09016 RNU6-946P-201ENST00000383878 107 ntBASIC2.56□□□□□ -2
HOXD4P09016 SNORA18.3-201ENST00000384122 132 ntBASIC2.56□□□□□ -2
HOXD4P09016 Y_RNA.453-201ENST00000384223 109 ntBASIC2.56□□□□□ -2
HOXD4P09016 Y_RNA.481-201ENST00000384373 102 ntBASIC2.56□□□□□ -2
HOXD4P09016 SNORA24.1-201ENST00000384401 135 ntBASIC2.56□□□□□ -2
HOXD4P09016 RNU6-606P-201ENST00000384721 111 ntBASIC2.56□□□□□ -2
HOXD4P09016 MIR454-201ENST00000390180 115 ntBASIC2.56□□□□□ -2
HOXD4P09016 MIR1277-201ENST00000408536 78 ntBASIC2.56□□□□□ -2
HOXD4P09016 RN7SKP140-201ENST00000411196 284 ntBASIC2.56□□□□□ -2
HOXD4P09016 USP9YP27-201ENST00000418455 438 ntBASIC2.56□□□□□ -2
HOXD4P09016 AL451054.2-201ENST00000420896 202 ntBASIC2.56□□□□□ -2
HOXD4P09016 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.56□□□□□ -2
HOXD4P09016 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 AC000111.3-201ENST00000433478 193 ntBASIC2.56□□□□□ -2
HOXD4P09016 AL031183.1-201ENST00000457667 207 ntBASIC2.56□□□□□ -2
HOXD4P09016 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 RPS29P15-201ENST00000458329 171 ntBASIC2.56□□□□□ -2
HOXD4P09016 RNU7-63P-201ENST00000459054 62 ntBASIC2.56□□□□□ -2
HOXD4P09016 AC006512.1-201ENST00000468816 291 ntBASIC2.56□□□□□ -2
HOXD4P09016 AC083798.1-201ENST00000472671 131 ntBASIC2.56□□□□□ -2
HOXD4P09016 RPL36AP51-201ENST00000487216 318 ntBASIC2.56□□□□□ -2
HOXD4P09016 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.56□□□□□ -2
HOXD4P09016 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 RNU6-1281P-201ENST00000516223 105 ntBASIC2.56□□□□□ -2
HOXD4P09016 SNORA40.12-201ENST00000516329 111 ntBASIC2.56□□□□□ -2
HOXD4P09016 NRON-201ENST00000517270 370 ntBASIC2.56□□□□□ -2
HOXD4P09016 OR5B19P-201ENST00000531766 928 ntBASIC2.56□□□□□ -2
HOXD4P09016 AP000867.2-201ENST00000532468 320 ntBASIC2.56□□□□□ -2
HOXD4P09016 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.56□□□□□ -2
HOXD4P09016 RPS3AP4-201ENST00000555161 764 ntBASIC2.56□□□□□ -2
HOXD4P09016 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.56□□□□□ -2
HOXD4P09016 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.56□□□□□ -2
HOXD4P09016 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.56□□□□□ -2
HOXD4P09016 AC008752.3-201ENST00000588113 712 ntBASIC2.56□□□□□ -2
HOXD4P09016 AL356575.1-201ENST00000603008 283 ntBASIC2.56□□□□□ -2
HOXD4P09016 AC090132.2-201ENST00000615881 347 ntBASIC2.56□□□□□ -2
HOXD4P09016 AC010297.1-201ENST00000623948 149 ntBASIC2.56□□□□□ -2
HOXD4P09016 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.56□□□□□ -2
HOXD4P09016 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXD4P09016 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.55□□□□□ -2
HOXD4P09016 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 RNU6-14P-201ENST00000384630 106 ntBASIC2.55□□□□□ -2
HOXD4P09016 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.55□□□□□ -2
HOXD4P09016 OR51A5P-201ENST00000415429 942 ntBASIC2.55□□□□□ -2
HOXD4P09016 ZNF90P2-204ENST00000419323 1075 ntBASIC2.55□□□□□ -2
HOXD4P09016 RPL7L1P10-201ENST00000427790 463 ntBASIC2.55□□□□□ -2
HOXD4P09016 MTND1P2-201ENST00000430604 821 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC092573.2-201ENST00000434546 243 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC016691.1-201ENST00000441321 413 ntBASIC2.55□□□□□ -2
HOXD4P09016 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.55□□□□□ -2
HOXD4P09016 DDX3P2-201ENST00000446138 111 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.55□□□□□ -2
HOXD4P09016 CACYBPP2-201ENST00000453625 678 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC010099.1-201ENST00000455434 375 ntBASIC2.55□□□□□ -2
HOXD4P09016 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXD4P09016 AL356010.1-201ENST00000456364 102 ntBASIC2.55□□□□□ -2
HOXD4P09016 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 AC092798.1-201ENST00000458542 409 ntBASIC2.55□□□□□ -2
HOXD4P09016 RPS20P20-201ENST00000460498 340 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.55□□□□□ -2
HOXD4P09016 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.55□□□□□ -2
HOXD4P09016 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 AC114781.4-201ENST00000513707 639 ntBASIC2.55□□□□□ -2
HOXD4P09016 SNORA31.15-201ENST00000516771 132 ntBASIC2.55□□□□□ -2
HOXD4P09016 RNU6-835P-201ENST00000516974 104 ntBASIC2.55□□□□□ -2
HOXD4P09016 RN7SKP258-201ENST00000517151 304 ntBASIC2.55□□□□□ -2
HOXD4P09016 MTND1P35-201ENST00000526739 508 ntBASIC2.55□□□□□ -2
HOXD4P09016 OR5AL2P-201ENST00000532185 920 ntBASIC2.55□□□□□ -2
HOXD4P09016 OR5BN1P-201ENST00000532955 829 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.55□□□□□ -2
HOXD4P09016 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.55□□□□□ -2
HOXD4P09016 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.55□□□□□ -2
HOXD4P09016 CYCSP39-201ENST00000565821 309 ntBASIC2.55□□□□□ -2
HOXD4P09016 AMZ2P1-203ENST00000565833 850 ntBASIC2.55□□□□□ -2
HOXD4P09016 RPL23AP84-201ENST00000571193 464 ntBASIC2.55□□□□□ -2
HOXD4P09016 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms