Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC097499.1-201ENST00000444277 208 ntBASIC0.11□□□□□ -2.39
APOBP04114 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.11□□□□□ -2.39
APOBP04114 AL163195.1-201ENST00000496941 348 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.11□□□□□ -2.39
APOBP04114 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.11□□□□□ -2.39
APOBP04114 RNU6-110P-201ENST00000384508 104 ntBASIC0.11□□□□□ -2.39
APOBP04114 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.11□□□□□ -2.39
APOBP04114 HMGB1P22-201ENST00000505315 124 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.11□□□□□ -2.39
APOBP04114 RNA5SP165-201ENST00000517142 115 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.11□□□□□ -2.39
APOBP04114 AC018618.2-201ENST00000604770 446 ntBASIC0.11□□□□□ -2.39
APOBP04114 AL359704.1-201ENST00000411586 781 ntBASIC0.11□□□□□ -2.39
APOBP04114 RPS29P8-201ENST00000445109 171 ntBASIC0.11□□□□□ -2.39
APOBP04114 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.11□□□□□ -2.39
APOBP04114 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.11□□□□□ -2.39
APOBP04114 VN1R82P-201ENST00000601481 356 ntBASIC0.11□□□□□ -2.39
APOBP04114 VN1R81P-201ENST00000602085 372 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.11□□□□□ -2.39
APOBP04114 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.11□□□□□ -2.39
APOBP04114 RPL7P29-201ENST00000437151 728 ntBASIC0.11□□□□□ -2.39
APOBP04114 SYPL1P1-201ENST00000473622 768 ntBASIC0.11□□□□□ -2.39
APOBP04114 COX6CP6-201ENST00000490840 228 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.11□□□□□ -2.39
APOBP04114 MIR7157-201ENST00000635801 60 ntBASIC0.11□□□□□ -2.39
APOBP04114 AC096656.1-201ENST00000623826 1364 ntBASIC0.1□□□□□ -2.39
APOBP04114 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.1□□□□□ -2.39
APOBP04114 ZNF863P-201ENST00000426746 417 ntBASIC0.1□□□□□ -2.39
APOBP04114 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.1□□□□□ -2.39
APOBP04114 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 AP003122.4-201ENST00000530980 758 ntBASIC0.1□□□□□ -2.39
APOBP04114 AC090115.3-201ENST00000553218 849 ntBASIC0.1□□□□□ -2.39
APOBP04114 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
APOBP04114 MTCO1P44-201ENST00000441935 243 ntBASIC0.1□□□□□ -2.39
APOBP04114 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 AP001025.1-201ENST00000486139 332 ntBASIC0.1□□□□□ -2.39
APOBP04114 SNORA3.4-201ENST00000515969 96 ntBASIC0.1□□□□□ -2.39
APOBP04114 AC004492.1-201ENST00000607036 742 ntBASIC0.1□□□□□ -2.39
APOBP04114 DUXAP10-204ENST00000612052 616 ntBASIC0.1□□□□□ -2.39
APOBP04114 U1.36-201ENST00000620684 176 ntBASIC0.1□□□□□ -2.39
APOBP04114 OR5H6-203ENST00000642105 978 ntBASIC0.1□□□□□ -2.39
APOBP04114 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 AL356320.2-201ENST00000417263 507 ntBASIC0.1□□□□□ -2.39
APOBP04114 RPS15AP40-201ENST00000419621 391 ntBASIC0.1□□□□□ -2.39
APOBP04114 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 AL645638.1-201ENST00000440519 361 ntBASIC0.1□□□□□ -2.39
APOBP04114 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.1□□□□□ -2.39
APOBP04114 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.1□□□□□ -2.39
APOBP04114 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC0.1□□□□□ -2.39
APOBP04114 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.1□□□□□ -2.39
APOBP04114 ZNF680P1-201ENST00000436625 1469 ntBASIC0.1□□□□□ -2.39
APOBP04114 RNU6-923P-201ENST00000364753 107 ntBASIC0.09□□□□□ -2.39
APOBP04114 RNU6-452P-201ENST00000384406 107 ntBASIC0.09□□□□□ -2.39
APOBP04114 MIR601-201ENST00000385256 79 ntBASIC0.09□□□□□ -2.39
APOBP04114 RPL21P111-201ENST00000418453 477 ntBASIC0.09□□□□□ -2.39
APOBP04114 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.09□□□□□ -2.39
APOBP04114 MTATP6P22-201ENST00000507369 598 ntBASIC0.09□□□□□ -2.39
APOBP04114 SNORA62.5-201ENST00000516634 120 ntBASIC0.09□□□□□ -2.39
APOBP04114 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.09□□□□□ -2.39
APOBP04114 AL021997.1-201ENST00000605757 193 ntBASIC0.09□□□□□ -2.39
APOBP04114 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.09□□□□□ -2.39
APOBP04114 MIR6516-201ENST00000630554 81 ntBASIC0.09□□□□□ -2.39
APOBP04114 RNU5D-1-201ENST00000363299 116 ntBASIC0.09□□□□□ -2.39
APOBP04114 Y_RNA.514-201ENST00000384528 112 ntBASIC0.09□□□□□ -2.39
APOBP04114 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC0.09□□□□□ -2.39
APOBP04114 AC009518.2-201ENST00000418056 731 ntBASIC0.09□□□□□ -2.39
APOBP04114 AL590365.1-201ENST00000450788 243 ntBASIC0.09□□□□□ -2.39
APOBP04114 MIR3609-201ENST00000582661 80 ntBASIC0.09□□□□□ -2.39
APOBP04114 MIR6864-201ENST00000617935 70 ntBASIC0.09□□□□□ -2.39
APOBP04114 AC134026.1-201ENST00000623249 2239 ntBASIC0.09□□□□□ -2.39
APOBP04114 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.09□□□□□ -2.39
APOBP04114 RNA5SP368-201ENST00000364298 116 ntBASIC0.09□□□□□ -2.4
APOBP04114 SNORA25-201ENST00000384384 134 ntBASIC0.09□□□□□ -2.4
APOBP04114 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
APOBP04114 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.09□□□□□ -2.4
APOBP04114 RNU6-775P-201ENST00000459318 96 ntBASIC0.09□□□□□ -2.4
APOBP04114 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC0.09□□□□□ -2.4
APOBP04114 RPL23AP54-201ENST00000495129 419 ntBASIC0.09□□□□□ -2.4
APOBP04114 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.09□□□□□ -2.4
APOBP04114 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.09□□□□□ -2.4
APOBP04114 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.09□□□□□ -2.4
APOBP04114 AC022493.2-201ENST00000506122 481 ntBASIC0.09□□□□□ -2.4
APOBP04114 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.09□□□□□ -2.4
APOBP04114 SNORA14.1-201ENST00000516113 141 ntBASIC0.09□□□□□ -2.4
APOBP04114 AC021739.1-201ENST00000559631 174 ntBASIC0.09□□□□□ -2.4
APOBP04114 MIR6130-201ENST00000619419 109 ntBASIC0.09□□□□□ -2.4
APOBP04114 AC092192.1-201ENST00000633154 1018 ntBASIC0.09□□□□□ -2.4
APOBP04114 Y_RNA.453-201ENST00000384223 109 ntBASIC0.08□□□□□ -2.4
APOBP04114 RNU6-348P-201ENST00000384386 107 ntBASIC0.08□□□□□ -2.4
APOBP04114 SNORA40.19-201ENST00000390846 128 ntBASIC0.08□□□□□ -2.4
APOBP04114 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.08□□□□□ -2.4
APOBP04114 RNU6-420P-201ENST00000458780 107 ntBASIC0.08□□□□□ -2.4
APOBP04114 AC004987.4-201ENST00000603383 338 ntBASIC0.08□□□□□ -2.4
APOBP04114 AC004241.3-201ENST00000611728 517 ntBASIC0.08□□□□□ -2.4
APOBP04114 AC013470.4-201ENST00000619978 986 ntBASIC0.08□□□□□ -2.4
APOBP04114 MIR8065-201ENST00000620577 100 ntBASIC0.08□□□□□ -2.4
APOBP04114 FAM157B-203ENST00000639350 358 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms