Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RN7SKP226-201ENST00000364912 300 ntBASIC3.11□□□□□ -1.91
RTN3O95197 RNU6-8-201ENST00000365467 107 ntBASIC3.11□□□□□ -1.91
RTN3O95197 RNU6-116P-201ENST00000384042 109 ntBASIC3.11□□□□□ -1.91
RTN3O95197 Y_RNA.510-201ENST00000384511 114 ntBASIC3.11□□□□□ -1.91
RTN3O95197 MIR181B1-201ENST00000385240 110 ntBASIC3.11□□□□□ -1.91
RTN3O95197 RNU6-550P-201ENST00000391057 101 ntBASIC3.11□□□□□ -1.91
RTN3O95197 RNU4-46P-201ENST00000410818 138 ntBASIC3.11□□□□□ -1.91
RTN3O95197 Y_RNA.623-201ENST00000411128 95 ntBASIC3.11□□□□□ -1.91
RTN3O95197 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.11□□□□□ -1.91
RTN3O95197 MTCO2P19-201ENST00000427513 598 ntBASIC3.11□□□□□ -1.91
RTN3O95197 AC107083.1-201ENST00000439643 279 ntBASIC3.11□□□□□ -1.91
RTN3O95197 AL161651.1-201ENST00000440882 223 ntBASIC3.11□□□□□ -1.91
RTN3O95197 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.11□□□□□ -1.91
RTN3O95197 MTND1P18-201ENST00000448191 573 ntBASIC3.11□□□□□ -1.91
RTN3O95197 NDUFB1P2-201ENST00000449477 176 ntBASIC3.11□□□□□ -1.91
RTN3O95197 NIPA2P5-201ENST00000452282 464 ntBASIC3.11□□□□□ -1.91
RTN3O95197 AL583843.1-201ENST00000456070 346 ntBASIC3.11□□□□□ -1.91
RTN3O95197 AC105417.1-201ENST00000514691 285 ntBASIC3.11□□□□□ -1.91
RTN3O95197 SCGB1D5P-201ENST00000515134 247 ntBASIC3.11□□□□□ -1.91
RTN3O95197 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
RTN3O95197 MIR4703-201ENST00000577728 79 ntBASIC3.11□□□□□ -1.91
RTN3O95197 MIR5692A1-201ENST00000580523 69 ntBASIC3.11□□□□□ -1.91
RTN3O95197 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.11□□□□□ -1.91
RTN3O95197 AL137790.1-201ENST00000634283 177 ntBASIC3.11□□□□□ -1.91
RTN3O95197 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RTN3O95197 SNORA9.2-201ENST00000365361 133 ntBASIC3.1□□□□□ -1.91
RTN3O95197 MIR578-201ENST00000384828 96 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AL512633.1-201ENST00000399931 655 ntBASIC3.1□□□□□ -1.91
RTN3O95197 RPS4XP8-201ENST00000402039 771 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AL139095.1-201ENST00000404326 391 ntBASIC3.1□□□□□ -1.91
RTN3O95197 HMGN2P35-201ENST00000412164 270 ntBASIC3.1□□□□□ -1.91
RTN3O95197 MTCO3P41-201ENST00000414801 328 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.1□□□□□ -1.91
RTN3O95197 DLGAP5P1-201ENST00000430307 464 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AL627311.1-201ENST00000431514 115 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC009296.1-201ENST00000443146 155 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC233279.1-201ENST00000455300 423 ntBASIC3.1□□□□□ -1.91
RTN3O95197 GMFBP1-201ENST00000467831 427 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.1□□□□□ -1.91
RTN3O95197 AC008716.1-201ENST00000511084 513 ntBASIC3.1□□□□□ -1.91
RTN3O95197 GLYCAM1-201ENST00000546596 285 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC234778.2-201ENST00000566241 354 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AL391813.1-201ENST00000603098 260 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AL645944.1-201ENST00000603857 493 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC006386.2-201ENST00000624491 75 ntBASIC3.1□□□□□ -1.91
RTN3O95197 AC012005.1-201ENST00000624575 75 ntBASIC3.1□□□□□ -1.91
RTN3O95197 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.1□□□□□ -1.91
RTN3O95197 OR5AK4P-201ENST00000635912 903 ntBASIC3.1□□□□□ -1.91
RTN3O95197 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.1□□□□□ -1.91
RTN3O95197 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.1□□□□□ -1.91
RTN3O95197 AC108206.1-201ENST00000570186 4159 ntBASIC3.1□□□□□ -1.91
RTN3O95197 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.1□□□□□ -1.91
RTN3O95197 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.1□□□□□ -1.91
RTN3O95197 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
RTN3O95197 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
RTN3O95197 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
RTN3O95197 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.09□□□□□ -1.91
RTN3O95197 AC004944.1-201ENST00000517807 3059 ntBASIC3.09□□□□□ -1.91
RTN3O95197 MAPK10-266ENST00000641066 6555 ntBASIC3.09□□□□□ -1.91
RTN3O95197 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.09□□□□□ -1.91
RTN3O95197 RNU6-371P-201ENST00000364283 108 ntBASIC3.09□□□□□ -1.91
RTN3O95197 RNU6-1179P-201ENST00000384667 107 ntBASIC3.09□□□□□ -1.91
RTN3O95197 SNORD88.1-201ENST00000408684 91 ntBASIC3.09□□□□□ -1.91
RTN3O95197 VN1R108P-201ENST00000431580 830 ntBASIC3.09□□□□□ -1.91
RTN3O95197 AL139132.1-201ENST00000431587 344 ntBASIC3.09□□□□□ -1.91
RTN3O95197 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.09□□□□□ -1.91
RTN3O95197 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.09□□□□□ -1.91
RTN3O95197 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.09□□□□□ -1.91
RTN3O95197 RN7SL633P-201ENST00000488974 297 ntBASIC3.09□□□□□ -1.91
RTN3O95197 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.09□□□□□ -1.91
RTN3O95197 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.09□□□□□ -1.91
RTN3O95197 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
RTN3O95197 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.09□□□□□ -1.91
RTN3O95197 AP000787.2-201ENST00000604432 568 ntBASIC3.09□□□□□ -1.91
RTN3O95197 HULC.1-201ENST00000612720 240 ntBASIC3.09□□□□□ -1.91
RTN3O95197 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.09□□□□□ -1.91
RTN3O95197 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
RTN3O95197 AC009487.2-201ENST00000420969 6821 ntBASIC3.09□□□□□ -1.92
RTN3O95197 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.92
RTN3O95197 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
RTN3O95197 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
RTN3O95197 SNORD3E-201ENST00000362899 217 ntBASIC3.08□□□□□ -1.92
RTN3O95197 RNU4-75P-201ENST00000364621 146 ntBASIC3.08□□□□□ -1.92
RTN3O95197 RNU6-898P-201ENST00000365627 104 ntBASIC3.08□□□□□ -1.92
RTN3O95197 MIR518D-201ENST00000385014 87 ntBASIC3.08□□□□□ -1.92
RTN3O95197 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.08□□□□□ -1.92
RTN3O95197 RPL21P90-201ENST00000415692 466 ntBASIC3.08□□□□□ -1.92
RTN3O95197 AL513477.1-202ENST00000417061 214 ntBASIC3.08□□□□□ -1.92
RTN3O95197 MTCO3P30-201ENST00000426425 670 ntBASIC3.08□□□□□ -1.92
RTN3O95197 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.08□□□□□ -1.92
RTN3O95197 DNAJC19P4-201ENST00000440115 345 ntBASIC3.08□□□□□ -1.92
RTN3O95197 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.08□□□□□ -1.92
RTN3O95197 AL360271.2-201ENST00000447710 161 ntBASIC3.08□□□□□ -1.92
RTN3O95197 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.08□□□□□ -1.92
RTN3O95197 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RTN3O95197 AC092001.1-201ENST00000453012 261 ntBASIC3.08□□□□□ -1.92
RTN3O95197 RNU7-63P-201ENST00000459054 62 ntBASIC3.08□□□□□ -1.92
RTN3O95197 RPS29P26-201ENST00000477483 171 ntBASIC3.08□□□□□ -1.92
RTN3O95197 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.08□□□□□ -1.92
RTN3O95197 HMGB1P30-201ENST00000492455 606 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms