Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RN7SKP289-201ENST00000517244 295 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 OR5D17P-201ENST00000531492 978 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 AL590705.4-201ENST00000532209 134 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 MTND6P33-201ENST00000571794 183 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA3O43365 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.46□□□□□ -1.86
HOXA3O43365 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA3O43365 AL160290.3-201ENST00000604869 165 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 SCARNA4-202ENST00000625402 129 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 MIR372-201ENST00000362225 67 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNU6-874P-201ENST00000362390 105 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNU1-14P-201ENST00000362759 152 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 Y_RNA.123-201ENST00000363338 102 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNU4-50P-201ENST00000364361 141 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNA5SP283-201ENST00000365604 119 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 Z98749.2-208ENST00000381646 500 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 Y_RNA.396-201ENST00000383949 103 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNU6-784P-201ENST00000384330 106 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNU6-713P-201ENST00000384761 107 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 SNORA48.7-201ENST00000391302 135 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 RNA5SP104-201ENST00000410989 118 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RBMY1KP-201ENST00000423480 476 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AL157831.1-201ENST00000426134 473 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXA3O43365 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.45□□□□□ -1.86
HOXA3O43365 AL132838.2-201ENST00000492041 314 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 UBE2CP3-201ENST00000502715 450 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC025445.1-201ENST00000502728 300 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC010265.1-201ENST00000513509 211 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RNU6-911P-201ENST00000516523 104 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXA3O43365 AP004242.1-201ENST00000533701 349 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC010186.2-204ENST00000537668 439 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.45□□□□□ -1.86
HOXA3O43365 ZNF192P1-203ENST00000565888 810 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXA3O43365 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXA3O43365 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 AC125232.2-201ENST00000592457 143 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 RPS29P30-201ENST00000600975 111 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC006077.1-201ENST00000604746 343 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AC064801.1-201ENST00000612025 407 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 AL159153.1-201ENST00000619688 317 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 U2.21-201ENST00000637295 81 ntBASIC3.45□□□□□ -1.86
HOXA3O43365 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA3O43365 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HOXA3O43365 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA3O43365 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA3O43365 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA3O43365 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HOXA3O43365 Y_RNA.276-201ENST00000364732 109 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 Y_RNA.307-201ENST00000365022 117 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 DEFB109C-201ENST00000382575 264 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 DEFB109B-201ENST00000382656 264 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 RNU6-658P-201ENST00000384606 106 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXA3O43365 Y_RNA.592-201ENST00000410274 109 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA3O43365 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA3O43365 AL117339.2-201ENST00000430475 180 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA3O43365 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA3O43365 MTATP6P7-201ENST00000453315 681 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 RN7SKP210-201ENST00000459176 261 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA3O43365 AL592156.1-201ENST00000508758 304 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXA3O43365 SNORA25.11-201ENST00000515935 105 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 RNA5SP154-201ENST00000516193 111 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 SNORA31.18-201ENST00000517043 134 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms