Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 AL022400.1-201ENST00000423946 935 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 RPS15AP9-201ENST00000439856 381 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AC117454.1-201ENST00000491120 168 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 HMGN1P13-201ENST00000505795 138 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AP003392.2-201ENST00000527269 208 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AC087276.1-201ENST00000529659 480 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AL512310.8-201ENST00000550183 120 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AC098826.3-201ENST00000603823 466 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AL590095.2-201ENST00000604136 117 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 AC010149.2-201ENST00000637608 315 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 SLC10A5P1-201ENST00000379063 1306 ntBASIC0.36□□□□□ -2.35
CHKB-CPT1BH3BT56 RNU6-296P-201ENST00000384608 107 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AC119751.3-201ENST00000399720 670 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 Y_RNA.625-201ENST00000411256 107 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AL161935.2-201ENST00000414627 60 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AC114482.1-201ENST00000418010 247 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 TRIM60P13-201ENST00000432350 1283 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AC092001.1-201ENST00000453012 261 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 CECR9-201ENST00000453421 199 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 TRBVA-201ENST00000498804 316 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 YWHAEP4-201ENST00000505390 198 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 RNU6-581P-201ENST00000516214 105 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 RNU6-840P-201ENST00000517275 65 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AC022616.8-201ENST00000533569 253 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 TRAV32-201ENST00000553993 340 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 RPL30P11-203ENST00000598995 310 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 RNU6-91P-201ENST00000607774 107 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 MIR6810-201ENST00000622701 70 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 ATP8A2P2-201ENST00000437678 1568 ntBASIC0.35□□□□□ -2.35
CHKB-CPT1BH3BT56 MTND4P16-201ENST00000466108 1367 ntBASIC0.34□□□□□ -2.35
CHKB-CPT1BH3BT56 NACAP2-201ENST00000318548 624 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 Y_RNA.99-201ENST00000363138 105 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 RNU1-39P-201ENST00000383897 165 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 RNU6-546P-201ENST00000383991 107 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR520E-201ENST00000384867 87 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR532-201ENST00000385025 91 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 SNORA26.9-201ENST00000391322 122 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AL121882.1-201ENST00000422893 417 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AL929288.2-201ENST00000446368 407 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AL050341.1-201ENST00000447743 313 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 HMGN2P9-201ENST00000476875 229 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 RPS27P22-201ENST00000478056 241 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 RAP1BP2-201ENST00000478270 544 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 RPL7P43-201ENST00000478876 753 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AC100821.1-201ENST00000523153 2479 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 MRPS36P5-201ENST00000551909 298 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 BNIP3P16-201ENST00000589779 534 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AC008751.2-201ENST00000597885 980 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AC009229.3-201ENST00000608056 282 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR6857-201ENST00000613267 93 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AL118556.2-201ENST00000614375 824 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 AC008993.2-201ENST00000631744 806 ntBASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
CHKB-CPT1BH3BT56 MTND5P35-201ENST00000557537 1720 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 RNU6-23P-201ENST00000363283 107 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 Y_RNA.245-201ENST00000364493 95 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR23B-201ENST00000384832 97 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 MIR525-201ENST00000384978 85 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AC092634.6-201ENST00000418558 192 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AC008267.5-201ENST00000424928 265 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 RPS6P15-201ENST00000431996 751 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 MTND2P4-201ENST00000445034 1004 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AC132479.1-201ENST00000449160 144 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 HSPE1P13-201ENST00000451143 297 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AL157398.1-201ENST00000452981 186 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 ACA59.2-201ENST00000517061 156 ntBASIC0.33□□□□□ -2.36
CHKB-CPT1BH3BT56 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms