Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC008549.1-201ENST00000512900 643 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 RNU6-677P-201ENST00000516914 101 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC022616.3-201ENST00000523940 148 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AP000889.1-201ENST00000530968 660 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 OR5B19P-201ENST00000531766 928 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC021739.1-201ENST00000559631 174 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 MIR4446-201ENST00000578505 67 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 MIR3117-201ENST00000584034 78 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC005261.5-201ENST00000596280 355 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC073544.2-201ENST00000601155 540 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC068276.1-201ENST00000605793 379 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AL451064.1-201ENST00000607718 471 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.53□□□□□ -2.01
VPS54Q9P1Q0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC080100.1-201ENST00000624239 5356 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 HSPE1P11-201ENST00000339579 310 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 RNY3P10-201ENST00000384764 102 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 SNORA40.3-201ENST00000390964 122 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC127391.1-201ENST00000411737 98 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 HMGN1P14-201ENST00000412459 517 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC096649.2-201ENST00000416186 393 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL022238.1-201ENST00000442557 355 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 FABP5P13-201ENST00000452144 328 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 MTCO2P29-201ENST00000465212 189 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 TRBV1-201ENST00000476502 284 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 EIF4EP3-201ENST00000498782 656 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 RNU6-914P-201ENST00000516749 109 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC007151.1-201ENST00000572774 483 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 MIR3167-201ENST00000579623 85 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 LRRC37A5P-203ENST00000580181 585 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC024619.4-201ENST00000580924 316 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 CLIC4P2-201ENST00000601934 717 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL355598.1-201ENST00000604169 202 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC121247.2-201ENST00000604776 136 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL133173.2-201ENST00000614270 90 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL590808.1-201ENST00000618696 141 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC110994.2-201ENST00000635481 492 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 U6.99-201ENST00000637524 83 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AL137003.2-201ENST00000606924 2538 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC005336.3-201ENST00000623833 2679 ntBASIC2.52□□□□□ -2.01
VPS54Q9P1Q0 AC004520.1-201ENST00000608362 1413 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 SNORD116-8-201ENST00000384365 95 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 Y_RNA.534-201ENST00000384599 112 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 RNU6-297P-201ENST00000384636 107 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 RPS3AP36-201ENST00000398190 775 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 RNA5SP508-201ENST00000411327 119 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AF274854.1-201ENST00000413236 615 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 Z98742.3-201ENST00000418637 326 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AL139413.1-201ENST00000421309 217 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 ISCA1P6-201ENST00000427740 390 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 MTATP6P17-201ENST00000431030 672 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 RPL23AP30-201ENST00000432419 501 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AL445687.1-201ENST00000439946 251 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 OSTCP8-201ENST00000445117 448 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 HMGN2P10-201ENST00000448085 265 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AC098826.2-201ENST00000452011 651 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 MTATP6P7-201ENST00000453315 681 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 SCARNA11.3-201ENST00000517276 130 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 AC108479.2-201ENST00000617314 601 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 ADAM3A-203ENST00000461344 2157 ntBASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS54Q9P1Q0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS54Q9P1Q0 AC073343.1-201ENST00000328239 651 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms