Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RNU6-778P-201ENST00000363269 103 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RNA5SP479-201ENST00000364858 117 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RNU6-827P-201ENST00000365553 106 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RNU6-72P-201ENST00000384285 79 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 SNORA57.1-201ENST00000391227 145 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AL513475.1-201ENST00000406602 315 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 U3.37-201ENST00000408528 213 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 MIR1251-201ENST00000408552 70 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AL159987.2-201ENST00000432754 307 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 HIGD1AP2-201ENST00000446367 280 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RPL26P9-201ENST00000457466 433 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AK3P2-201ENST00000507976 429 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 SMURF2P1-201ENST00000514992 481 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RNU6-264P-201ENST00000517134 104 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AP004607.1-201ENST00000524456 203 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 HIGD1AP1-201ENST00000550979 275 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC109446.1-201ENST00000566172 220 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 MIR4286-201ENST00000580651 93 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC009314.1-201ENST00000603871 304 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC012603.1-201ENST00000606424 528 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 PLCE1P1-201ENST00000622094 305 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 AC092608.2-201ENST00000624427 218 ntBASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 RPL9P7-201ENST00000330965 580 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 Y_RNA.404-201ENST00000383978 102 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 SNORA3C-201ENST00000408792 125 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 MIR1183-201ENST00000408856 89 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 RNA5SP306-201ENST00000411087 107 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AL133396.1-201ENST00000432048 687 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AL513043.1-201ENST00000439124 535 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 MIR2053-201ENST00000459295 91 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 RPL9P9-202ENST00000466501 579 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AC133134.1-201ENST00000466800 359 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AL163540.1-201ENST00000485382 386 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 RNU6-928P-201ENST00000516876 104 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 Y_RNA.711-201ENST00000516993 102 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 RNU6-988P-201ENST00000519081 107 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 ELOCP31-201ENST00000540463 467 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AL360157.1-201ENST00000565962 87 ntBASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.95□□□□□ -1.78
TRIM39Q9HCM9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 Y_RNA.112-201ENST00000363250 102 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 RNU6-596P-201ENST00000365395 98 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 Y_RNA.473-201ENST00000384333 102 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 RNA5SP31-201ENST00000411144 127 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AL117339.3-201ENST00000418733 162 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 TBCAP1-201ENST00000436520 327 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 snoU109.2-201ENST00000459316 135 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 RNA5SP179-201ENST00000517284 121 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC022634.1-201ENST00000520765 532 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC023442.1-201ENST00000531247 422 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 CYCSP39-201ENST00000565821 309 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 MIR4273-201ENST00000582824 84 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AL606490.9-201ENST00000603331 271 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 AC012468.1-201ENST00000604888 430 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 MIR6875-201ENST00000617506 72 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 MIR6500-201ENST00000622700 86 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 uc_338.22-201ENST00000622722 187 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 FP236240.3-201ENST00000623061 327 ntBASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms