Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 YPEL5P1-201ENST00000419731 367 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RPS15AP6-201ENST00000420703 385 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RPS3AP46-201ENST00000448352 682 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 NDUFB1P2-201ENST00000449477 176 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RPS23P3-201ENST00000470993 430 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RPL21P13-201ENST00000488305 481 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC016925.2-201ENST00000605108 242 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC019193.3-201ENST00000609144 554 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC138627.2-201ENST00000624202 601 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC012442.3-202ENST00000636742 206 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AL353746.1-201ENST00000566293 6881 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNORD9-201ENST00000362566 104 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 Y_RNA.202-201ENST00000364083 110 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNORA63C-201ENST00000364578 129 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNORA73.2-201ENST00000364946 201 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AL359837.1-201ENST00000381357 287 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNORA22B-201ENST00000383876 138 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNORA5A-201ENST00000384111 134 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-166P-201ENST00000384371 107 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-738P-201ENST00000384531 106 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 MIR517A-201ENST00000385001 87 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNORA11-201ENST00000408789 128 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 CRYBB2P1-203ENST00000415709 538 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 PGBD4P6-201ENST00000421501 610 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AC092573.2-201ENST00000434546 243 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 RPL30P5-201ENST00000494923 336 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SMURF2P1-201ENST00000514992 481 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 CASP1P1-201ENST00000526345 212 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AL732372.2-225ENST00000642124 456 ntBASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
PCIF1Q9H4Z3 AL049641.1-201ENST00000441055 1948 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 Y_RNA.112-201ENST00000363250 102 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 MTHFD2P2-201ENST00000407725 247 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 SYF2P2-201ENST00000417620 583 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AC092047.1-201ENST00000424997 240 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AC097713.2-201ENST00000430199 356 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AL627311.1-201ENST00000431514 115 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AL512844.2-201ENST00000433990 593 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 SNRPEP9-201ENST00000436794 238 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 ANP32BP2-201ENST00000454525 545 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AC018437.1-201ENST00000492214 406 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AC113155.1-201ENST00000511141 769 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-1045P-201ENST00000516321 107 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 RNU2-58P-201ENST00000516403 183 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-572P-201ENST00000516724 80 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AC006504.6-201ENST00000590142 199 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AL160281.1-201ENST00000605307 311 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AL121917.1-203ENST00000605534 577 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AL162730.1-201ENST00000605734 292 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 AC006023.2-201ENST00000609916 167 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 U4.6-201ENST00000621618 127 ntBASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PCIF1Q9H4Z3 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 Y_RNA.5-201ENST00000362334 102 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-37P-201ENST00000362692 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-11P-201ENST00000364234 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNA5SP42-201ENST00000364278 115 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-7-201ENST00000364784 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-8-201ENST00000365467 107 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 158.8 ms