Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC005183.1-201ENST00000603687 1979 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 SNORA75.6-201ENST00000391318 127 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 MIR450B-201ENST00000401182 78 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 MIR548I3-201ENST00000408378 149 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 MIR548I1-201ENST00000408810 149 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 ARF4P2-201ENST00000430209 526 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 SCARNA18-201ENST00000459004 134 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC015911.1-201ENST00000495111 156 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC026782.1-201ENST00000512952 449 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 RNU6-388P-201ENST00000517012 105 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 RNU6-389P-201ENST00000517048 105 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC011602.1-201ENST00000546484 331 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC090115.3-201ENST00000553218 849 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AMZ2P1-203ENST00000565833 850 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 MIR3609-201ENST00000582661 80 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC011890.2-201ENST00000613393 294 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 CDC27P3-201ENST00000635418 1910 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 AC007656.2-201ENST00000624902 4547 ntBASIC3.93□□□□□ -1.78
CLIP3Q96DZ5 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.473-201ENST00000384333 102 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 RNU6-1035P-201ENST00000384477 107 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AL391417.1-201ENST00000404100 426 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 HSPE1P12-201ENST00000412576 301 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 BX682237.1-201ENST00000415016 335 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC008267.5-201ENST00000424928 265 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AL691449.1-201ENST00000426570 421 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 SNRPEP9-201ENST00000436794 238 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 SUMO1P2-201ENST00000452524 304 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 RPL29P14-201ENST00000495837 428 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 SUMO2P6-201ENST00000505273 288 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC116337.1-201ENST00000509680 687 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.661-201ENST00000516003 99 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.670-201ENST00000516255 105 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 RNU6-699P-201ENST00000517081 110 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 RNA5SP165-201ENST00000517142 115 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 RNU6-1315P-201ENST00000517187 99 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 HSPE1P7-201ENST00000604681 321 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC004805.2-201ENST00000605382 482 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC009229.3-201ENST00000608056 282 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC010378.1-201ENST00000619270 362 ntBASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.92□□□□□ -1.78
CLIP3Q96DZ5 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 FTLP6-201ENST00000355274 422 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 SNORA60-201ENST00000362396 134 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 RNU6-238P-201ENST00000363313 106 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 RN7SKP280-201ENST00000364196 304 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.257-201ENST00000364596 102 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.307-201ENST00000365022 117 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 RNU4-70P-201ENST00000384579 139 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 MIR134-201ENST00000385258 73 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 RNA5SP219-201ENST00000390940 113 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 RNU2-68P-201ENST00000410878 191 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 SNAP23P1-201ENST00000433229 246 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC006011.1-201ENST00000442758 349 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 DYNLL1P5-201ENST00000467158 270 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC104564.1-201ENST00000493028 407 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 RNU6-1231P-201ENST00000517185 103 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC084851.1-201ENST00000529105 249 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 HIGD1AP1-201ENST00000550979 275 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 MIR5692C1-201ENST00000585309 91 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AL606490.9-201ENST00000603331 271 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms