Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC007656.2-201ENST00000624902 4547 ntBASIC4.16□□□□□ -1.74
SMC1BQ8NDV3 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
SMC1BQ8NDV3 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SMC1BQ8NDV3 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SMC1BQ8NDV3 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.16□□□□□ -1.74
SMC1BQ8NDV3 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SMC1BQ8NDV3 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SMC1BQ8NDV3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SMC1BQ8NDV3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SMC1BQ8NDV3 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SMC1BQ8NDV3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 Y_RNA.301-201ENST00000364990 103 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 SNORA54-201ENST00000384281 123 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 Y_RNA.480-201ENST00000384364 102 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 RPL21P90-201ENST00000415692 466 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AL159169.1-201ENST00000421119 127 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 RPL7P5-201ENST00000471472 736 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 RNU6-256P-201ENST00000516747 97 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 RNU6-273P-201ENST00000516937 96 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 CYCSP27-201ENST00000527643 293 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AC093027.1-201ENST00000546698 429 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AL356055.1-201ENST00000602528 446 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AC012119.1-201ENST00000603184 222 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 U7.8-201ENST00000619968 63 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AC090574.1-201ENST00000623186 233 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AC244205.2-202ENST00000635781 342 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 MTND1P37-201ENST00000636562 264 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 AC066616.2-201ENST00000559334 1481 ntBASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SMC1BQ8NDV3 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 RNU4-79P-201ENST00000362764 141 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 RNU6-254P-201ENST00000363377 107 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 RNU6-371P-201ENST00000364283 108 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 SNORA4.3-201ENST00000365564 137 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 Y_RNA.460-201ENST00000384255 102 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 MIR450B-201ENST00000401182 78 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 AL139396.1-201ENST00000421137 167 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 MTND1P14-201ENST00000427400 950 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 RPL23AP69-201ENST00000431134 458 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 PIGFP3-201ENST00000441918 722 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 UBL5P3-201ENST00000475112 231 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 RPL39P5-202ENST00000512505 151 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 RNU6-277P-201ENST00000516272 106 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 MIR1273C-201ENST00000578669 77 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 MIR3942-201ENST00000585264 109 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 AC113139.1-201ENST00000605049 239 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 AC018692.3-201ENST00000623929 123 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 IGHVIII-44-202ENST00000636235 289 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
SMC1BQ8NDV3 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 RNU6-395P-201ENST00000365662 106 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 DEFB109C-201ENST00000382575 264 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 DEFB109B-201ENST00000382656 264 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 RNU6-1011P-201ENST00000384668 107 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 MIR493-201ENST00000385254 89 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AL139281.1-201ENST00000422120 335 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 RPL21P109-201ENST00000422213 475 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AC011742.1-201ENST00000431448 434 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 RPS24P13-201ENST00000442520 397 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AC109925.1-201ENST00000478069 331 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 SUMO2P6-201ENST00000505273 288 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AL157871.3-201ENST00000557231 293 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 ATP5A1P2-202ENST00000616464 443 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AL133216.2-202ENST00000634512 349 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 TNPO1P3-201ENST00000436471 2662 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 AC007785.2-201ENST00000598627 1916 ntBASIC4.13□□□□□ -1.75
SMC1BQ8NDV3 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 AC006026.1-201ENST00000444025 1803 ntBASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 NCAPGP1-201ENST00000505112 1814 ntBASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 Y_RNA.33-201ENST00000362591 102 ntBASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMC1BQ8NDV3 MIR578-201ENST00000384828 96 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms