Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR2909-201ENST00000617113 69 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 FRG1HP-204ENST00000617940 757 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
USF3Q68DE3 AL356131.1-201ENST00000405826 414 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 AL139098.1-201ENST00000407291 389 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.51□□□□□ -2.33
USF3Q68DE3 RPL31P35-201ENST00000431058 377 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 MTND4LP10-201ENST00000435146 291 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 RPS27P22-201ENST00000478056 241 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 UBL5P1-201ENST00000507979 193 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.51□□□□□ -2.33
USF3Q68DE3 AC117525.1-201ENST00000515228 503 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 AL355802.3-201ENST00000607571 545 ntBASIC0.51□□□□□ -2.33
USF3Q68DE3 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.51□□□□□ -2.33
USF3Q68DE3 RNU6-444P-201ENST00000383988 108 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 MIR95-201ENST00000385072 81 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 TAF9BP2-201ENST00000400856 499 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AC098934.3-201ENST00000430450 190 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.5□□□□□ -2.33
USF3Q68DE3 RSU1P2-202ENST00000437884 485 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AP001025.1-201ENST00000486139 332 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AC080013.4-201ENST00000607624 649 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AL121652.1-201ENST00000608851 448 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 RNU6-338P-201ENST00000383888 105 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 MIR29C-201ENST00000385231 88 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 NDUFS5P1-201ENST00000405668 289 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.5□□□□□ -2.33
USF3Q68DE3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
USF3Q68DE3 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.5□□□□□ -2.33
USF3Q68DE3 MTCO1P53-201ENST00000441633 699 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AC006512.1-201ENST00000468816 291 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.5□□□□□ -2.33
USF3Q68DE3 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.5□□□□□ -2.33
USF3Q68DE3 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AL356432.3-201ENST00000568952 465 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AC015688.2-201ENST00000584523 262 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC0.5□□□□□ -2.33
USF3Q68DE3 AL078604.3-201ENST00000615580 211 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 AC009233.1-201ENST00000616477 371 ntBASIC0.5□□□□□ -2.33
USF3Q68DE3 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
USF3Q68DE3 RNU6-939P-201ENST00000384634 107 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 PIGPP2-201ENST00000411569 458 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 EIF4EP2-201ENST00000422816 654 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 RPS27P16-201ENST00000425758 201 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 KATNBL1P6-201ENST00000453433 915 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 HAR1A.1-201ENST00000459583 118 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC021146.2-201ENST00000504736 556 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 SMURF2P1-201ENST00000514992 481 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 RNU6-322P-201ENST00000516010 103 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC022616.2-201ENST00000523185 300 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.49□□□□□ -2.33
USF3Q68DE3 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.49□□□□□ -2.33
USF3Q68DE3 AC012414.6-201ENST00000568241 401 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.49□□□□□ -2.33
USF3Q68DE3 AC243960.4-201ENST00000600532 288 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC021851.1-201ENST00000608537 1082 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC008443.7-201ENST00000622195 246 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 MTND2P41-201ENST00000637599 773 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC005832.2-201ENST00000538921 1430 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
USF3Q68DE3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
USF3Q68DE3 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
USF3Q68DE3 AL589655.1-201ENST00000405398 482 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.49□□□□□ -2.33
USF3Q68DE3 MTCO2P20-201ENST00000437339 673 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC098831.1-201ENST00000440661 216 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AL049734.2-201ENST00000441066 616 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC068135.1-201ENST00000446164 246 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 RPL30P6-201ENST00000475925 342 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 HMGB1P35-201ENST00000503360 598 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 RNU6-1256P-201ENST00000516539 103 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.49□□□□□ -2.33
USF3Q68DE3 AP003973.1-201ENST00000604639 691 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC138473.1-201ENST00000605717 526 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 AC008945.2-201ENST00000606056 604 ntBASIC0.49□□□□□ -2.33
USF3Q68DE3 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.48□□□□□ -2.33
USF3Q68DE3 AL589743.1-201ENST00000551932 2712 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AC073544.1-201ENST00000600110 1595 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 RNU6-222P-201ENST00000362438 107 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 HMGN2P39-201ENST00000398005 273 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 RNU2-43P-201ENST00000410306 190 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.48□□□□□ -2.33
USF3Q68DE3 RPS20P10-201ENST00000451209 253 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
USF3Q68DE3 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC013244.2-201ENST00000603396 103 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AL713866.2-201ENST00000603579 219 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 OR4G3P-201ENST00000633500 913 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 193 ms