Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 NIPA2P5-201ENST00000452282 464 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AC006026.2-201ENST00000457376 180 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 RPL23AP45-201ENST00000476406 468 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 RN7SL132P-201ENST00000478131 296 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.32□□□□□ -1.72
SF3A1Q15459 RNA5SP164-201ENST00000516533 110 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 SCARNA14-201ENST00000516903 136 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.32□□□□□ -1.72
SF3A1Q15459 COPS8P3-201ENST00000526024 482 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SF3A1Q15459 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.32□□□□□ -1.72
SF3A1Q15459 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.32□□□□□ -1.72
SF3A1Q15459 AC006130.2-201ENST00000586202 326 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AC005261.5-201ENST00000596280 355 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 SNORA62.6-201ENST00000606322 83 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.32□□□□□ -1.72
SF3A1Q15459 AC099654.5-201ENST00000636479 350 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 CEP170P1-201ENST00000502249 4587 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
SF3A1Q15459 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 CDC27P3-201ENST00000635418 1910 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SF3A1Q15459 RNU1-105P-201ENST00000363470 161 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 Y_RNA.301-201ENST00000364990 103 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 SNORA62.3-201ENST00000365110 153 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 RNU1-100P-201ENST00000365255 165 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.31□□□□□ -1.72
SF3A1Q15459 MIR554-201ENST00000384874 96 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 AC023141.4-201ENST00000412031 328 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 SNORD56-201ENST00000413522 71 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SF3A1Q15459 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.31□□□□□ -1.72
SF3A1Q15459 RPL32P28-201ENST00000443577 397 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SF3A1Q15459 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.31□□□□□ -1.72
SF3A1Q15459 RPL39P5-202ENST00000512505 151 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 RNU6-566P-201ENST00000516790 107 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.31□□□□□ -1.72
SF3A1Q15459 MIR5047-201ENST00000579212 100 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 AL606490.9-201ENST00000603331 271 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 AL355877.2-201ENST00000603670 358 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 ELOCP5-201ENST00000604924 333 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
SF3A1Q15459 FP236240.3-201ENST00000623061 327 ntBASIC4.31□□□□□ -1.72
SF3A1Q15459 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SF3A1Q15459 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SF3A1Q15459 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
SF3A1Q15459 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SF3A1Q15459 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SF3A1Q15459 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SF3A1Q15459 Y_RNA.263-201ENST00000364659 114 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 SNORD116-11-201ENST00000383882 92 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 NCOR1P3-201ENST00000420479 303 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.3□□□□□ -1.72
SF3A1Q15459 RPL7P2-201ENST00000427639 268 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 ARF4P2-201ENST00000430209 526 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.3□□□□□ -1.72
SF3A1Q15459 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.3□□□□□ -1.72
SF3A1Q15459 SNAP23P1-201ENST00000433229 246 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AL161651.1-201ENST00000440882 223 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.3□□□□□ -1.72
SF3A1Q15459 MTND1P11-201ENST00000456661 876 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 RPL23AP14-201ENST00000468281 468 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.3□□□□□ -1.72
SF3A1Q15459 AC116655.1-201ENST00000508324 901 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.3□□□□□ -1.72
SF3A1Q15459 RNA5SP454-201ENST00000517231 127 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AC105029.1-201ENST00000520250 669 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AP005639.2-201ENST00000527592 928 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SF3A1Q15459 MIR4286-201ENST00000580651 93 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AP000787.2-201ENST00000604432 568 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AL121917.1-203ENST00000605534 577 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 AL355365.1-201ENST00000616480 294 ntBASIC4.3□□□□□ -1.72
SF3A1Q15459 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
SF3A1Q15459 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
SF3A1Q15459 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SF3A1Q15459 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SF3A1Q15459 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SF3A1Q15459 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SF3A1Q15459 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
SF3A1Q15459 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.29□□□□□ -1.72
SF3A1Q15459 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SF3A1Q15459 ZNF519P1-201ENST00000449011 1626 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 RPS4XP5-202ENST00000449995 1334 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC004944.1-201ENST00000517807 3059 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 RNU6-78P-201ENST00000362897 107 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 RNU6-1329P-201ENST00000365664 107 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 CD24P4-201ENST00000382840 243 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SF3A1Q15459 RNA5SP424-201ENST00000390988 115 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 RNA5SP354-201ENST00000391247 136 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 RHEBP3-201ENST00000411920 351 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.29□□□□□ -1.72
SF3A1Q15459 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.29□□□□□ -1.72
SF3A1Q15459 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms