Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AC138473.1-201ENST00000605717 526 ntBASIC0.18□□□□□ -2.38
TFF3Q07654 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
TFF3Q07654 ZNF680P1-201ENST00000436625 1469 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 RNU6-288P-201ENST00000363690 104 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
TFF3Q07654 RNA5SP299-201ENST00000391203 116 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 RPL31P35-201ENST00000431058 377 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 AL358794.1-201ENST00000445689 381 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 AL353691.1-201ENST00000451332 387 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 BET1P1-201ENST00000482276 359 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 RNA5SP112-201ENST00000515937 99 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 SNORA48.9-201ENST00000516419 162 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC0.17□□□□□ -2.38
TFF3Q07654 AC022387.2-201ENST00000604050 448 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 AC099842.1-201ENST00000619919 596 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.17□□□□□ -2.38
TFF3Q07654 MIR7157-201ENST00000635801 60 ntBASIC0.17□□□□□ -2.38
TFF3Q07654 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.17□□□□□ -2.38
TFF3Q07654 AC134026.1-201ENST00000623249 2239 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 RNU6-45P-201ENST00000384471 107 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 MIR32-201ENST00000384965 70 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.16□□□□□ -2.38
TFF3Q07654 snoU13.28-201ENST00000459235 104 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 AL590705.4-201ENST00000532209 134 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC0.16□□□□□ -2.38
TFF3Q07654 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.16□□□□□ -2.38
TFF3Q07654 AC010620.1-201ENST00000601088 1102 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 AC104763.3-201ENST00000613765 618 ntBASIC0.16□□□□□ -2.38
TFF3Q07654 Y_RNA.458-201ENST00000384240 102 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 Y_RNA.476-201ENST00000384347 108 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 MIR608-201ENST00000384820 100 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 AC023141.4-201ENST00000412031 328 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 USP9YP33-201ENST00000412220 421 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.15□□□□□ -2.39
TFF3Q07654 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.15□□□□□ -2.39
TFF3Q07654 RPL23AP35-201ENST00000451906 501 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 RPL30P6-201ENST00000475925 342 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 TRBVA-201ENST00000498804 316 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 AC022447.1-201ENST00000515358 464 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 RNA5SP285-201ENST00000516619 119 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 AC005832.3-201ENST00000537929 631 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 MIR5190-201ENST00000581537 80 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 AC022202.1-201ENST00000613515 211 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 AC007792.1-201ENST00000623023 402 ntBASIC0.15□□□□□ -2.39
TFF3Q07654 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.14□□□□□ -2.39
TFF3Q07654 RNU4-23P-201ENST00000362839 140 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 RNU2-36P-201ENST00000410361 191 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AC019070.1-201ENST00000415008 1024 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 RSU1P2-202ENST00000437884 485 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 MTND2P8-201ENST00000450555 1025 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.14□□□□□ -2.39
TFF3Q07654 AC002350.1-201ENST00000490759 375 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 RNU4-54P-201ENST00000516428 129 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 RNU6-197P-201ENST00000516680 100 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.14□□□□□ -2.39
TFF3Q07654 SNRPGP16-201ENST00000533275 226 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 EIF4A1P12-201ENST00000551910 141 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AC233702.2-202ENST00000562547 291 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.14□□□□□ -2.39
TFF3Q07654 AP001330.4-201ENST00000604350 154 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AC018618.2-201ENST00000604770 446 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.14□□□□□ -2.39
TFF3Q07654 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AC002550.2-201ENST00000621246 394 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC0.14□□□□□ -2.39
TFF3Q07654 MTND4P12-201ENST00000498999 1377 ntBASIC0.14□□□□□ -2.39
TFF3Q07654 AL513185.3-201ENST00000433335 1300 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 RNU6-418P-201ENST00000384035 107 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
TFF3Q07654 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.13□□□□□ -2.39
TFF3Q07654 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.13□□□□□ -2.39
TFF3Q07654 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.13□□□□□ -2.39
TFF3Q07654 AL034418.1-201ENST00000448675 860 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 COX6CP6-201ENST00000490840 228 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 CYCTP-201ENST00000504253 315 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 AC118282.2-201ENST00000508739 374 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 AF213884.2-201ENST00000510417 903 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 RNA5SP476-201ENST00000516613 103 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.13□□□□□ -2.39
TFF3Q07654 AL132857.1-201ENST00000555180 708 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 AC027335.2-201ENST00000624030 375 ntBASIC0.13□□□□□ -2.39
TFF3Q07654 MTND4P14-201ENST00000435799 1354 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 AC069282.1-201ENST00000411911 526 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 RPS15AP38-201ENST00000413110 372 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.12□□□□□ -2.39
TFF3Q07654 PGBD4P5-201ENST00000445958 426 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.12□□□□□ -2.39
TFF3Q07654 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.12□□□□□ -2.39
TFF3Q07654 SCARNA3-201ENST00000517097 143 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 AL359212.1-201ENST00000556608 614 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 HMGN2P15-201ENST00000585707 270 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC0.12□□□□□ -2.39
TFF3Q07654 AL360085.1-201ENST00000604713 532 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 AC006213.5-201ENST00000619673 288 ntBASIC0.12□□□□□ -2.39
TFF3Q07654 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
TFF3Q07654 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.11□□□□□ -2.39
TFF3Q07654 RNU4-31P-201ENST00000384211 141 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 MIR518D-201ENST00000385014 87 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 RPS3AP37-201ENST00000419176 745 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms