Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU4-77P-201ENST00000516692 156 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 OR4H12P-201ENST00000556269 907 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 SUB1P3-201ENST00000564581 315 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 MIR4716-201ENST00000579628 84 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 KLKP1-201ENST00000595979 403 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
COL4A3Q01955 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL4A3Q01955 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
COL4A3Q01955 AC020633.1-201ENST00000468439 2247 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A3Q01955 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.63□□□□□ -1.83
COL4A3Q01955 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A3Q01955 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A3Q01955 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC083843.2-201ENST00000568248 6253 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 Y_RNA.39-201ENST00000362620 98 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 Y_RNA.307-201ENST00000365022 117 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 SNORD14.1-201ENST00000365609 90 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 DEFB109C-201ENST00000382575 264 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 DEFB109B-201ENST00000382656 264 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU6-842P-201ENST00000384269 107 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU6-45P-201ENST00000384471 107 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 MIR135A2-201ENST00000384854 100 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC110754.1-201ENST00000399740 601 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 HLFP1-201ENST00000402375 499 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AL357075.1-201ENST00000404107 726 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 HSPE1P8-201ENST00000406997 288 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNA5SP56-201ENST00000410277 118 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU4-78P-201ENST00000410940 126 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AC243428.1-201ENST00000421099 264 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AL353752.1-201ENST00000454946 260 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU6-953P-201ENST00000459154 107 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AC008571.1-201ENST00000467232 300 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RPL32P34-201ENST00000486380 400 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RPL21P13-201ENST00000488305 481 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RPL22P13-201ENST00000493291 347 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AC107222.1-201ENST00000510899 637 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU6-408P-201ENST00000515910 100 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A3Q01955 LARP7P3-201ENST00000579888 337 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 MIR5692A1-201ENST00000580523 69 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AC005332.5-201ENST00000591222 2919 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A3Q01955 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 AL021879.1-201ENST00000611756 288 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 MIR486-1-201ENST00000612171 68 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 MIR7111-201ENST00000619751 72 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 MIR4727-201ENST00000622232 55 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A3Q01955 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
COL4A3Q01955 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC092435.3-201ENST00000565538 3654 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AL031595.2-201ENST00000624215 19071 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A3Q01955 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC138393.1-203ENST00000327086 343 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU6-450P-201ENST00000364654 107 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 Y_RNA.314-201ENST00000365114 102 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 U3.39-201ENST00000408569 239 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RPL21P90-201ENST00000415692 466 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AL160275.3-201ENST00000423876 471 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC002553.2-201ENST00000453217 340 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 PCMTD1P1-201ENST00000455560 355 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU7-138P-201ENST00000459479 64 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RPL37P6-201ENST00000460682 294 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AC011005.2-201ENST00000487324 359 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 AC114801.2-201ENST00000503825 781 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 RNU6-1095P-201ENST00000516148 108 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.62□□□□□ -1.83
COL4A3Q01955 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A3Q01955 MFSD8-233ENST00000641482 4860 ntBASIC3.62□□□□□ -1.83
COL4A3Q01955 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A3Q01955 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A3Q01955 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL4A3Q01955 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A3Q01955 RNA5SP322-201ENST00000363617 119 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 MIR517A-201ENST00000385001 87 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL4A3Q01955 RNU6-1156P-201ENST00000410365 100 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 AC092809.3-201ENST00000415453 231 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 AL356968.1-201ENST00000416622 474 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 RPS15AP10-201ENST00000432472 382 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 U3.44-201ENST00000458938 192 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 RNU7-187P-201ENST00000458985 68 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 AC108860.1-201ENST00000484521 383 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 AC009901.1-201ENST00000506703 541 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 AP003385.6-201ENST00000531603 374 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 AC022882.1-201ENST00000532142 501 ntBASIC3.61□□□□□ -1.83
COL4A3Q01955 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A3Q01955 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.61□□□□□ -1.83
COL4A3Q01955 AC125232.2-201ENST00000592457 143 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms