Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA4Q00056 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA4Q00056 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA4Q00056 AC010653.1-201ENST00000571108 881 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 MIR5685-201ENST00000579080 79 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 MIR3690-201ENST00000580266 75 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AC093227.2-201ENST00000589357 285 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 MIR3976-201ENST00000606807 139 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA4Q00056 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA4Q00056 AC073073.2-201ENST00000609827 2578 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA4Q00056 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HOXA4Q00056 AC018529.3-201ENST00000624212 2254 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AL021368.2-201ENST00000606125 5352 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA4Q00056 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA4Q00056 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA4Q00056 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
HOXA4Q00056 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA4Q00056 Y_RNA.80-201ENST00000362996 102 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU6-1309P-201ENST00000363305 108 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNA5SP189-201ENST00000364920 115 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNA5SP167-201ENST00000365461 116 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU6-574P-201ENST00000384265 107 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU6-166P-201ENST00000384371 107 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 Y_RNA.485-201ENST00000384395 102 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 Y_RNA.527-201ENST00000384573 102 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 MIR134-201ENST00000385258 73 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 SNORA40C-201ENST00000391285 128 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 U3.42-201ENST00000408746 214 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU6-174P-201ENST00000410406 106 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU2-68P-201ENST00000410878 191 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 CYCSP19-201ENST00000411715 316 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RPL17P36-201ENST00000420302 549 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA4Q00056 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA4Q00056 MRPS18CP6-201ENST00000423587 223 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 AC007560.1-201ENST00000426912 237 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA4Q00056 AL627311.1-201ENST00000431514 115 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 AC092573.2-201ENST00000434546 243 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 RPL23AP45-201ENST00000476406 468 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 S100A11P1-201ENST00000477525 312 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA4Q00056 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU6-572P-201ENST00000516724 80 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU6-264P-201ENST00000517134 104 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 SNORD116.3-201ENST00000517176 78 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RNU1-45P-201ENST00000517191 141 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 AC008011.1-201ENST00000545989 227 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
HOXA4Q00056 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA4Q00056 CPDP1-201ENST00000579660 283 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 AC005899.2-201ENST00000584353 90 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 Z69720.2-201ENST00000624755 279 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 AL078596.1-201ENST00000624856 447 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 AC119674.1-207ENST00000641355 633 ntBASIC3.21□□□□□ -1.9
HOXA4Q00056 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA4Q00056 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA4Q00056 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA4Q00056 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA4Q00056 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXA4Q00056 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA4Q00056 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA4Q00056 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA4Q00056 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA4Q00056 AC007685.1-201ENST00000329806 452 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RPL9P7-201ENST00000330965 580 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 SNORA31-201ENST00000362607 130 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RNA5SP97-201ENST00000365006 84 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RNU6-827P-201ENST00000365553 106 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AC117470.1-201ENST00000381974 330 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 MIR568-201ENST00000385036 95 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 MIR708-201ENST00000390708 88 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RNU6-1197P-201ENST00000391183 107 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RNA5SP129-201ENST00000410276 118 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AC092047.1-201ENST00000424997 240 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 SNRPEP9-201ENST00000436794 238 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AL513043.1-201ENST00000439124 535 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 Z82210.1-201ENST00000440037 231 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AL645939.1-201ENST00000453429 797 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA4Q00056 AC092798.1-201ENST00000458542 409 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 snoU109.2-201ENST00000459316 135 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RNU6-1037P-201ENST00000459571 107 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RPL9P9-202ENST00000466501 579 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 MTATP8P1-201ENST00000467115 207 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RN7SL542P-201ENST00000467147 294 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 FO393415.2-201ENST00000480085 343 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RN7SL271P-201ENST00000487601 295 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 RPS26P15-201ENST00000488067 348 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms