Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-483P-201ENST00000384088 108 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-1029P-201ENST00000384109 107 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-1060P-201ENST00000384664 107 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 Y_RNA.573-201ENST00000384763 105 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 MIR325-201ENST00000385260 98 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 AL591416.1-201ENST00000404015 867 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 BTF3P7-201ENST00000407097 488 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU2-29P-201ENST00000410423 189 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 USP9YP27-201ENST00000418455 438 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 AL512844.2-201ENST00000433990 593 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AL596276.1-201ENST00000434465 418 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC016691.1-201ENST00000441321 413 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.18□□□□□ -1.9
SHMT1P34896 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.18□□□□□ -1.9
SHMT1P34896 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.18□□□□□ -1.9
SHMT1P34896 HMGN2P13-201ENST00000476476 274 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AL163973.1-201ENST00000484753 577 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC114781.4-201ENST00000513707 639 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNA5SP385-201ENST00000515947 110 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-123P-201ENST00000516163 102 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-1281P-201ENST00000516223 105 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 Y_RNA.704-201ENST00000516851 102 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 SNORA31.21-201ENST00000517180 77 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.18□□□□□ -1.9
SHMT1P34896 AC109635.3-201ENST00000529536 185 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.18□□□□□ -1.9
SHMT1P34896 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.18□□□□□ -1.9
SHMT1P34896 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 AC008752.3-201ENST00000588113 712 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.18□□□□□ -1.9
SHMT1P34896 AL162413.1-201ENST00000603198 110 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC008945.2-201ENST00000606056 604 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC004832.5-201ENST00000608677 401 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.18□□□□□ -1.9
SHMT1P34896 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 AC022336.2-201ENST00000568966 2538 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 AC006020.1-201ENST00000420179 1854 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 ASNSP3-201ENST00000451989 1306 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHMT1P34896 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHMT1P34896 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
SHMT1P34896 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.17□□□□□ -1.9
SHMT1P34896 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHMT1P34896 Y_RNA.255-201ENST00000364581 97 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 Y_RNA.381-201ENST00000365666 102 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 SNORD115-47-201ENST00000391226 86 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 SAR1AP2-201ENST00000392696 594 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 AC092809.3-201ENST00000415453 231 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 MTCYBP5-201ENST00000423752 1135 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.17□□□□□ -1.9
SHMT1P34896 GPM6BP2-201ENST00000432046 144 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 GPM6BP1-201ENST00000446387 144 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AL590664.1-201ENST00000448065 339 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 AL121769.1-201ENST00000469473 401 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 RPS26P21-201ENST00000475397 348 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 RPS15AP34-201ENST00000487776 387 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 RBBP4P6-201ENST00000508098 202 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AC098591.2-201ENST00000510152 315 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 RNU6-718P-201ENST00000516166 105 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 RNU6-685P-201ENST00000517088 95 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.17□□□□□ -1.9
SHMT1P34896 HMGB1P14-201ENST00000557424 591 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.17□□□□□ -1.9
SHMT1P34896 MIR4703-201ENST00000577728 79 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 MIR4506-201ENST00000584693 77 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AC008962.1-201ENST00000605729 304 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AC005046.1-201ENST00000608515 625 ntBASIC3.17□□□□□ -1.9
SHMT1P34896 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.17□□□□□ -1.9
SHMT1P34896 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.17□□□□□ -1.9
SHMT1P34896 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHMT1P34896 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.17□□□□□ -1.9
SHMT1P34896 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.17□□□□□ -1.9
SHMT1P34896 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHMT1P34896 XGY1-201ENST00000381172 446 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 SNORA69-201ENST00000383895 132 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 RNU1-101P-201ENST00000391171 127 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AL354719.1-201ENST00000406535 843 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 RPL7P46-201ENST00000425129 740 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 MTCO1P20-201ENST00000425366 358 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 ELOCP14-201ENST00000428070 331 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AL591704.1-201ENST00000432574 275 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 ELOCP7-201ENST00000439968 331 ntBASIC3.16□□□□□ -1.9
SHMT1P34896 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms