Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MRPS31P2-201ENST00000451581 518 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.81□□□□□ -1.8
SMARCA1P28370 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.81□□□□□ -1.8
SMARCA1P28370 TBCAP3-201ENST00000512475 312 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 AC104136.1-201ENST00000512969 394 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.81□□□□□ -1.8
SMARCA1P28370 HIGD1AP1-201ENST00000550979 275 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 MIR3942-201ENST00000585264 109 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 AC008962.1-201ENST00000605729 304 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 AC087045.1-201ENST00000605856 382 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 RMST_8.1-201ENST00000610287 165 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 AC096577.2-201ENST00000611455 153 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 AL512643.1-201ENST00000635735 524 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 TPTEP1-208ENST00000636884 213 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.81□□□□□ -1.8
SMARCA1P28370 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SMARCA1P28370 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.81□□□□□ -1.8
SMARCA1P28370 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SMARCA1P28370 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SMARCA1P28370 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SMARCA1P28370 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.8□□□□□ -1.8
SMARCA1P28370 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SMARCA1P28370 RNU6-525P-201ENST00000363685 104 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 RNU6-434P-201ENST00000384376 107 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 RNU6-45P-201ENST00000384471 107 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 RPS4XP7-201ENST00000406274 780 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 RNA5SP229-201ENST00000410809 99 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SMARCA1P28370 AC063979.1-201ENST00000415539 377 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC007919.1-201ENST00000429380 217 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 UBE2V1P7-201ENST00000446395 340 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 Z75741.1-201ENST00000446793 314 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.8□□□□□ -1.8
SMARCA1P28370 RNU7-167P-201ENST00000459160 62 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.8□□□□□ -1.8
SMARCA1P28370 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.8□□□□□ -1.8
SMARCA1P28370 PHBP14-201ENST00000512887 367 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.8□□□□□ -1.8
SMARCA1P28370 CASP1P1-201ENST00000526345 212 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.8□□□□□ -1.8
SMARCA1P28370 AC012119.1-201ENST00000603184 222 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 YPEL5P2-201ENST00000605553 359 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC107294.1-201ENST00000609524 467 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC099778.2-201ENST00000610904 211 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 uc_338.5-201ENST00000611839 155 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AL157817.1-201ENST00000614264 790 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC027309.3-201ENST00000623419 351 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC022418.1-201ENST00000624118 445 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC073476.4-201ENST00000628409 72 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SMARCA1P28370 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.8□□□□□ -1.8
SMARCA1P28370 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.8□□□□□ -1.8
SMARCA1P28370 AC073346.2-201ENST00000624724 2058 ntBASIC3.8□□□□□ -1.8
SMARCA1P28370 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SMARCA1P28370 RNU6-1252P-201ENST00000363054 104 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 RNA5SP387-201ENST00000364226 106 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 RNA5SP31-201ENST00000411144 127 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 RPL21P90-201ENST00000415692 466 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 RPS15AP6-201ENST00000420703 385 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AL353705.1-201ENST00000433468 480 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC092573.2-201ENST00000434546 243 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.79□□□□□ -1.8
SMARCA1P28370 PIGFP3-201ENST00000441918 722 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AL360271.2-201ENST00000447710 161 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AL590664.1-201ENST00000448065 339 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.79□□□□□ -1.8
SMARCA1P28370 FABP5P15-201ENST00000453566 214 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 PPP1R2P5-201ENST00000457256 603 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC010401.1-201ENST00000463867 348 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 KC877373.1-201ENST00000479066 408 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AL160314.1-201ENST00000490836 438 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.79□□□□□ -1.8
SMARCA1P28370 HIGD1AP13-201ENST00000509878 289 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.79□□□□□ -1.8
SMARCA1P28370 RNU6-864P-201ENST00000516256 108 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.79□□□□□ -1.8
SMARCA1P28370 AP000763.2-201ENST00000540641 163 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.79□□□□□ -1.8
SMARCA1P28370 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.79□□□□□ -1.8
SMARCA1P28370 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.79□□□□□ -1.8
SMARCA1P28370 MIR4795-201ENST00000584182 89 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.79□□□□□ -1.8
SMARCA1P28370 AC005498.1-201ENST00000592125 465 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC073539.2-201ENST00000597113 165 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC243960.4-201ENST00000600532 288 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AC012468.1-201ENST00000604888 430 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 ATP1B3P1-201ENST00000605365 821 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.79□□□□□ -1.8
SMARCA1P28370 AL121757.2-201ENST00000611223 313 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 U2.17-201ENST00000611454 95 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 MIR7153-201ENST00000637758 57 ntBASIC3.79□□□□□ -1.8
SMARCA1P28370 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SMARCA1P28370 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SMARCA1P28370 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SMARCA1P28370 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.78□□□□□ -1.8
SMARCA1P28370 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.78□□□□□ -1.8
SMARCA1P28370 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
SMARCA1P28370 RNU6-254P-201ENST00000363377 107 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms