Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.67□□□□□ -1.82
COL3A1P02461 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.67□□□□□ -1.82
COL3A1P02461 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL3A1P02461 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.67□□□□□ -1.82
COL3A1P02461 AL669831.4-202ENST00000590817 238 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 GLUD1P4-201ENST00000590914 418 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.67□□□□□ -1.82
COL3A1P02461 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.67□□□□□ -1.82
COL3A1P02461 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL3A1P02461 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.67□□□□□ -1.82
COL3A1P02461 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL3A1P02461 RNU6-1188P-201ENST00000363795 107 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 Y_RNA.367-201ENST00000365544 101 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 RNU6-1032P-201ENST00000384100 107 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 RNU6-1222P-201ENST00000384615 107 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 MRPL42P3-201ENST00000401492 326 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AL590004.2-201ENST00000404787 371 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AL023807.1-201ENST00000407932 359 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 RN7SKP158-201ENST00000410453 326 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.67□□□□□ -1.82
COL3A1P02461 AL139396.1-201ENST00000421137 167 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.67□□□□□ -1.82
COL3A1P02461 AL138799.3-201ENST00000438968 350 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.67□□□□□ -1.82
COL3A1P02461 RPL23AP31-201ENST00000456160 467 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 RN7SL283P-201ENST00000489055 303 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.67□□□□□ -1.82
COL3A1P02461 RNU6-237P-201ENST00000515985 71 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AC011979.2-201ENST00000527568 352 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.67□□□□□ -1.82
COL3A1P02461 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.67□□□□□ -1.82
COL3A1P02461 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.67□□□□□ -1.82
COL3A1P02461 MIR4680-201ENST00000580906 66 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 HMGB1P24-202ENST00000615653 685 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 uc_338.11-201ENST00000619132 160 ntBASIC3.67□□□□□ -1.82
COL3A1P02461 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.67□□□□□ -1.82
COL3A1P02461 AL049641.1-201ENST00000441055 1948 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL3A1P02461 TAB3P1-202ENST00000452645 1634 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL3A1P02461 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
COL3A1P02461 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.66□□□□□ -1.82
COL3A1P02461 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.66□□□□□ -1.82
COL3A1P02461 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.66□□□□□ -1.82
COL3A1P02461 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL3A1P02461 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL3A1P02461 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL3A1P02461 Y_RNA.135-201ENST00000363439 95 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 RNU5E-8P-201ENST00000363502 116 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 SNORD113-7-201ENST00000363762 77 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 RNU6-522P-201ENST00000364497 107 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 RNU6-921P-201ENST00000384361 107 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 RNU6-441P-201ENST00000384545 106 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 Y_RNA.557-201ENST00000384680 107 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL3A1P02461 AC016769.3-201ENST00000396562 315 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.66□□□□□ -1.82
COL3A1P02461 RPS15AP6-201ENST00000420703 385 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AL160004.2-201ENST00000432935 350 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 UBE2V1P13-201ENST00000436983 439 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.66□□□□□ -1.82
COL3A1P02461 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.66□□□□□ -1.82
COL3A1P02461 PRPS1P1-201ENST00000445305 876 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AC104308.1-201ENST00000454621 333 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 SNORD109B-201ENST00000458961 67 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 SNORD109A-201ENST00000459128 67 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AC015911.1-201ENST00000495111 156 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.66□□□□□ -1.82
COL3A1P02461 AP005902.1-201ENST00000521358 186 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AP000889.2-201ENST00000532684 490 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 MTCO3P23-201ENST00000561363 289 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
COL3A1P02461 MIR3942-201ENST00000585264 109 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 ELOCP29-201ENST00000588193 334 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.66□□□□□ -1.82
COL3A1P02461 HSPE1P14-201ENST00000605812 302 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 uc_338.12-201ENST00000616344 181 ntBASIC3.66□□□□□ -1.82
COL3A1P02461 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.66□□□□□ -1.82
COL3A1P02461 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.65□□□□□ -1.82
COL3A1P02461 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.65□□□□□ -1.82
COL3A1P02461 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.65□□□□□ -1.82
COL3A1P02461 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL3A1P02461 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL3A1P02461 AC097714.1-201ENST00000511272 1647 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 MIR26A1-201ENST00000362205 77 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 RNU6-552P-201ENST00000362869 119 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 Y_RNA.148-201ENST00000363557 117 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.65□□□□□ -1.83
COL3A1P02461 Y_RNA.482-201ENST00000384377 111 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 PRRC2CP1-201ENST00000404428 159 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 RNU2-52P-201ENST00000410680 190 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 AC234781.4-201ENST00000419384 244 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.65□□□□□ -1.83
COL3A1P02461 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.65□□□□□ -1.83
COL3A1P02461 TIMM9P1-201ENST00000436122 256 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 MTATP8P1-201ENST00000467115 207 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.65□□□□□ -1.83
COL3A1P02461 RNU6-273P-201ENST00000516937 96 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms