Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RPL7P54-201ENST00000438336 674 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 MTND1P34-201ENST00000438556 671 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AC107083.1-201ENST00000439643 279 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC11O43248 AL118520.1-201ENST00000450770 291 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 TPTE2P5-203ENST00000458118 728 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AL163973.1-201ENST00000484753 577 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 LRRC34P2-201ENST00000514850 553 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU6-720P-201ENST00000516363 108 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU6-506P-201ENST00000516553 94 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU6-314P-201ENST00000516574 104 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RN7SKP219-201ENST00000516825 296 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXC11O43248 AC234778.2-201ENST00000566241 354 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC11O43248 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC11O43248 AC087045.1-201ENST00000605856 382 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AP001330.5-201ENST00000607176 411 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 MIR6134-201ENST00000617606 109 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AL359880.1-201ENST00000621879 266 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AC091903.1-201ENST00000624322 454 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 AC084035.1-201ENST00000634543 607 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC11O43248 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.18□□□□□ -1.9
HOXC11O43248 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC11O43248 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
HOXC11O43248 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 AC008264.2-201ENST00000610193 3731 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC11O43248 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 SNORA80A-201ENST00000363922 136 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HOXC11O43248 SNORA75B-201ENST00000384053 137 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 RNU6-19P-201ENST00000384718 107 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 RNU6-1158P-201ENST00000391167 107 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 MTCYBP8-201ENST00000422855 651 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC11O43248 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC11O43248 AL606489.2-201ENST00000433886 234 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 OSTCP8-201ENST00000445117 448 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 NDUFB1P2-201ENST00000449477 176 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXC11O43248 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC11O43248 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 AC092001.1-201ENST00000453012 261 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC11O43248 RNU6-581P-201ENST00000516214 105 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC11O43248 AC009812.2-201ENST00000517657 457 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 AC022880.1-201ENST00000534017 973 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC11O43248 AC092325.1-201ENST00000566449 554 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 MIR4506-201ENST00000584693 77 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 AC010620.2-201ENST00000600135 313 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.17□□□□□ -1.9
HOXC11O43248 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXC11O43248 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXC11O43248 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC11O43248 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC11O43248 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HOXC11O43248 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC000403.1-201ENST00000613696 3585 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC11O43248 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC11O43248 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC11O43248 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC11O43248 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC11O43248 Y_RNA.41-201ENST00000362646 102 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 RNU6-552P-201ENST00000362869 119 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 SNORD3E-201ENST00000362899 217 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 RNU6-715P-201ENST00000365204 103 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 Y_RNA.381-201ENST00000365666 102 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 Z98749.2-208ENST00000381646 500 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 RNU6-45P-201ENST00000384471 107 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 MIR10A-201ENST00000385043 110 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 RNU6-903P-201ENST00000391270 109 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC11O43248 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC11O43248 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC000111.3-201ENST00000433478 193 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 MTND3P21-201ENST00000433774 331 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AL360271.2-201ENST00000447710 161 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC11O43248 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC11O43248 AL441985.1-201ENST00000457727 251 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC096576.1-201ENST00000489014 359 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 GZMAP1-201ENST00000503054 631 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 FAM92A1P2-202ENST00000504766 877 ntBASIC3.16□□□□□ -1.9
HOXC11O43248 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC11O43248 AC009646.1-201ENST00000510455 318 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms