Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 AL360182.1-201ENST00000397433 468 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 RPS20P15-201ENST00000412792 311 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 DBIP2-201ENST00000419076 262 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 ARF4P2-201ENST00000430209 526 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 RNU7-138P-201ENST00000459479 64 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 AC139453.3-201ENST00000493276 369 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-323P-201ENST00000521915 107 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 AC100830.2-201ENST00000581636 240 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 OTUD4P1-201ENST00000237841 3067 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
PCDHA3Q9Y5H8 AL513302.2-201ENST00000562313 1842 ntBASIC3.65□□□□□ -1.82
PCDHA3Q9Y5H8 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
PCDHA3Q9Y5H8 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 FRG1CP-201ENST00000358464 769 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.324-201ENST00000365165 102 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.387-201ENST00000383918 102 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 SNORA1.3-201ENST00000384676 136 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL592148.1-201ENST00000413568 445 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC074085.1-201ENST00000413598 418 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL139396.1-201ENST00000421137 167 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL627311.1-201ENST00000431514 115 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 SNAP23P1-201ENST00000433229 246 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL359672.1-201ENST00000442302 409 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 MTND1P17-201ENST00000448961 204 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 HMGB3P8-201ENST00000449709 577 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 RNA5SP310-201ENST00000459084 116 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 RN7SL330P-201ENST00000469709 307 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC008526.1-201ENST00000509149 338 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 SNORA70.18-201ENST00000516696 98 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-703P-201ENST00000516946 107 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC093027.1-201ENST00000546698 429 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AMZ2P1-203ENST00000565833 850 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AC007151.1-201ENST00000572774 483 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL645944.1-201ENST00000603857 493 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL670379.10-201ENST00000604330 253 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AL670379.9-201ENST00000605428 253 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 AF127577.6-201ENST00000623352 2191 ntBASIC3.65□□□□□ -1.83
PCDHA3Q9Y5H8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 ZNF519P1-201ENST00000449011 1626 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 SNORD3E-201ENST00000362899 217 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-384P-201ENST00000364900 104 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.384-201ENST00000383909 102 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 FAT1P1-201ENST00000406588 507 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.623-201ENST00000411128 95 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 ATP5A1P2-201ENST00000412323 255 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 RPL31P12-201ENST00000422587 358 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC098614.2-201ENST00000426040 255 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC233279.1-201ENST00000455300 423 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 SNRPGP3-201ENST00000469405 227 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 SNORA31.19-201ENST00000517079 126 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC023632.4-201ENST00000517783 191 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 COPS8P3-201ENST00000526024 482 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC034105.4-201ENST00000568304 277 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 POLR3GP2-201ENST00000588366 668 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 APOOP1-201ENST00000604695 592 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 U2.21-201ENST00000637295 81 ntBASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms