Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MIR3941-201ENST00000582572 103 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AL355365.1-201ENST00000616480 294 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AL136164.4-201ENST00000625013 2135 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC090740.1-201ENST00000623193 2262 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 AC118273.1-201ENST00000525324 3006 ntBASIC3.42□□□□□ -1.86
VPS4AQ9UN37 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS4AQ9UN37 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC007785.2-201ENST00000598627 1916 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 Y_RNA.212-201ENST00000364177 102 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 RNU6-512P-201ENST00000364438 103 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AL139039.1-201ENST00000401900 692 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AL592045.1-201ENST00000429867 352 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC236972.1-201ENST00000433225 199 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 NDUFA5P4-201ENST00000436704 385 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC093019.1-201ENST00000443135 252 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AP001486.1-201ENST00000463339 476 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC084357.1-201ENST00000473404 255 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC092185.1-201ENST00000491371 97 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 RNU6-864P-201ENST00000516256 108 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 RNU6-1315P-201ENST00000517187 99 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 TRAV37-201ENST00000553906 342 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC136601.2-201ENST00000604356 474 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC087045.1-201ENST00000605856 382 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 MIR7851-201ENST00000610611 160 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AL132765.2-201ENST00000610812 351 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 PLCE1P1-201ENST00000622094 305 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AC022418.1-201ENST00000624118 445 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 Z99571.1-201ENST00000636677 394 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AL359693.1-201ENST00000614959 2407 ntBASIC3.41□□□□□ -1.86
VPS4AQ9UN37 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS4AQ9UN37 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS4AQ9UN37 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 SNORA32.2-201ENST00000384049 122 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.529-201ENST00000384586 119 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 EIF4E2P1-201ENST00000393781 255 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 U3.39-201ENST00000408569 239 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 RNA5SP120-201ENST00000410900 112 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 UBE2D3P2-201ENST00000424409 445 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AL590383.1-201ENST00000428602 75 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AL365400.1-201ENST00000431854 640 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 NDUFB4P6-201ENST00000436819 366 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 HIGD1AP13-201ENST00000509878 289 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 RNU1-61P-201ENST00000516107 151 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 RNU6-1069P-201ENST00000516612 133 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 TGIF1P1-201ENST00000558095 802 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC073539.2-201ENST00000597113 165 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC092747.3-201ENST00000603769 301 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AL022345.1-201ENST00000607292 135 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 uc_338.5-201ENST00000611839 155 ntBASIC3.4□□□□□ -1.87
VPS4AQ9UN37 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS4AQ9UN37 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC068647.1-201ENST00000489539 2265 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RNU6-254P-201ENST00000363377 107 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 SNORD113-7-201ENST00000363762 77 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RNU6-45P-201ENST00000384471 107 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 MIR578-201ENST00000384828 96 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AL122016.1-201ENST00000403365 367 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RPLP0P7-201ENST00000416050 667 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms