Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNORA75B-201ENST00000384053 137 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 RNU6-851P-201ENST00000384565 107 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 MIR1-2-201ENST00000384961 85 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 MIR147B-201ENST00000390185 80 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 CDK8P2-201ENST00000415020 547 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 MTCYBP5-201ENST00000423752 1135 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC092427.1-202ENST00000430569 476 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AL358934.1-201ENST00000432346 324 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 MTCO3P5-201ENST00000433620 714 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC022493.1-201ENST00000492984 337 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 RN7SKP298-201ENST00000515950 94 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 EIF4BP1-201ENST00000554881 351 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC234778.2-201ENST00000566241 354 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC073648.5-201ENST00000603502 305 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AC091834.1-201ENST00000614543 472 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AP001486.3-201ENST00000615334 372 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 U6.42-201ENST00000618440 107 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS28Q9UK41 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS28Q9UK41 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS28Q9UK41 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS28Q9UK41 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS28Q9UK41 RNU6-7-201ENST00000364784 107 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 RNU6-8-201ENST00000365467 107 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 MIR518D-201ENST00000385014 87 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 Y_RNA.623-201ENST00000411128 95 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AL031779.1-201ENST00000415663 330 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 AL139132.1-201ENST00000431587 344 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 RPS29P6-201ENST00000438196 145 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC104058.1-201ENST00000448028 297 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 GSTA11P-201ENST00000452866 669 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 RNU7-182P-201ENST00000459009 62 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS28Q9UK41 FAM92A1P2-202ENST00000504766 877 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC104806.1-201ENST00000508720 308 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC112206.3-201ENST00000514578 389 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 SNORA31.18-201ENST00000517043 134 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 RN7SKP40-201ENST00000517211 242 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 OR4R1P-201ENST00000529879 463 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AP002963.1-201ENST00000530590 184 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC007536.1-201ENST00000533382 349 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC090616.3-201ENST00000582184 217 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS28Q9UK41 AL645944.1-201ENST00000603857 493 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AL359740.1-201ENST00000624340 592 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 AC009161.2-201ENST00000624626 138 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 SEPT14P19-203ENST00000633205 211 ntBASIC2.98□□□□□ -1.93
VPS28Q9UK41 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS28Q9UK41 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS28Q9UK41 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS28Q9UK41 RNU6-748P-201ENST00000384648 107 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 SNORD88.1-201ENST00000408684 91 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC107083.1-201ENST00000439643 279 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC025750.2-201ENST00000442609 450 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 NDUFB1P2-201ENST00000449477 176 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AL441985.1-201ENST00000457727 251 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 RPL21P41-201ENST00000459863 264 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC097462.2-201ENST00000504623 481 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC116655.1-201ENST00000508324 901 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC079140.3-201ENST00000511111 550 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 SNORA31.6-201ENST00000516241 130 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 OR5BN1P-201ENST00000532955 829 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 SUB1P2-201ENST00000556401 297 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AP005136.1-201ENST00000579765 429 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 MIR3616-201ENST00000584070 92 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AL138889.2-201ENST00000603883 242 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms