Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.12□□□□□ -2.23
SCN3AQ9NY46 Y_RNA.245-201ENST00000364493 95 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 Y_RNA.355-201ENST00000365462 98 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RNA5SP465-201ENST00000391195 109 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 MIR1302-8-201ENST00000408342 128 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 MTND6P13-201ENST00000443510 523 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 MTND1P9-201ENST00000453775 944 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RPL12P25-201ENST00000455592 494 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RPL36AP48-201ENST00000485521 314 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RNA5SP112-201ENST00000515937 99 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 NDUFA5P6-201ENST00000542110 379 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL031274.2-201ENST00000599419 203 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC004805.2-201ENST00000605382 482 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RNU6-91P-201ENST00000607774 107 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AP002791.1-201ENST00000623291 381 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AP000676.3-201ENST00000623299 569 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC091932.3-201ENST00000624223 323 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 PTGES3P2-201ENST00000407942 482 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RPL21P24-201ENST00000413752 448 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 PTGES3P4-201ENST00000426243 356 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RAC1P8-201ENST00000427086 527 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC017099.1-201ENST00000448261 1028 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC112771.1-201ENST00000463581 102 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC008379.1-201ENST00000463655 464 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL160314.1-201ENST00000490836 438 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.11□□□□□ -2.23
SCN3AQ9NY46 SNORA4-201ENST00000584302 138 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC005034.5-201ENST00000604219 466 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL450336.1-201ENST00000605180 586 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AL773524.1-201ENST00000614065 229 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 uc_338.12-201ENST00000616344 181 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 AC009233.1-201ENST00000616477 371 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 RMST_2.1-201ENST00000617263 136 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.11□□□□□ -2.23
SCN3AQ9NY46 SNORA23-201ENST00000365128 182 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AL109755.1-201ENST00000401791 649 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 NDUFS5P1-201ENST00000405668 289 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AL365400.1-201ENST00000431854 640 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 MTND2P20-201ENST00000440805 661 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC098591.2-201ENST00000510152 315 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC069304.2-201ENST00000605154 435 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC013476.2-201ENST00000614456 459 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC097460.3-201ENST00000623099 442 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC233981.2-201ENST00000611524 1614 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 RNA5SP276-201ENST00000362580 94 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 RNU6-223P-201ENST00000362830 107 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 SNORD26-201ENST00000384147 75 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 MIR150-201ENST00000385048 84 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 SNORA40.6-201ENST00000391153 128 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 RNU2-63P-201ENST00000410792 194 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AL158823.1-201ENST00000418441 478 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 RPS15AP12-201ENST00000419498 388 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AL512844.2-201ENST00000433990 593 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC108729.2-201ENST00000476543 840 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AL359212.1-201ENST00000556608 614 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC022254.1-201ENST00000567857 235 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 AC109446.2-201ENST00000567872 497 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 MIR4299-201ENST00000577899 72 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 MIR4713-201ENST00000582691 75 ntBASIC1.1□□□□□ -2.23
SCN3AQ9NY46 RNU5E-8P-201ENST00000363502 116 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 MIR499A-201ENST00000384903 122 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 UBE2V1P15-201ENST00000407776 448 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AC093106.2-201ENST00000428212 385 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.09□□□□□ -2.24
SCN3AQ9NY46 DNAJC19P4-201ENST00000440115 345 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 RPS4XP11-201ENST00000446897 772 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.09□□□□□ -2.24
SCN3AQ9NY46 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.09□□□□□ -2.24
SCN3AQ9NY46 FAM206BP-201ENST00000510179 541 ntBASIC1.09□□□□□ -2.24
SCN3AQ9NY46 RNU6-840P-201ENST00000517275 65 ntBASIC1.09□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms