Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 XGY1-201ENST00000381172 446 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 Y_RNA.394-201ENST00000383942 103 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 Y_RNA.431-201ENST00000384086 102 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 RNU6-1297P-201ENST00000384415 104 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 RNU2-68P-201ENST00000410878 191 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 SKA2P1-201ENST00000425592 390 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 SAR1AP4-201ENST00000429225 591 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 SNAP23P1-201ENST00000433229 246 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 SNRPEP9-201ENST00000436794 238 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 FABP5P14-201ENST00000437273 393 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 RPL7P28-201ENST00000437739 740 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AL359672.1-201ENST00000442302 409 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 ANP32BP2-201ENST00000454525 545 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 CEACAMP4-201ENST00000457676 421 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 RNU7-138P-201ENST00000459479 64 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC011005.2-201ENST00000487324 359 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 MIR892C-201ENST00000516410 77 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 RN7SKP209-201ENST00000516888 304 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC069113.1-201ENST00000517763 267 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC025755.1-201ENST00000521306 278 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 MIR5195-201ENST00000583555 115 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC007938.3-201ENST00000604965 623 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC048347.1-201ENST00000624621 427 ntBASIC3.72□□□□□ -1.81
TDP1Q9NUW8 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
TDP1Q9NUW8 AC005183.1-201ENST00000603687 1979 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AC090740.1-201ENST00000623193 2262 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 MIR412-201ENST00000362142 91 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 RNU6-525P-201ENST00000363685 104 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 RNU1-33P-201ENST00000364249 162 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.259-201ENST00000364619 101 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.324-201ENST00000365165 102 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AL356057.2-201ENST00000403318 432 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AL592148.1-201ENST00000413568 445 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AL590632.1-201ENST00000424289 371 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 HMGB1P9-201ENST00000429856 646 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 RPL21P10-201ENST00000463521 490 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 NUTF2P8-201ENST00000604593 363 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AC006077.1-201ENST00000604746 343 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 MTND4LP32-201ENST00000636111 270 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AL133383.2-201ENST00000622958 2336 ntBASIC3.71□□□□□ -1.82
TDP1Q9NUW8 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
TDP1Q9NUW8 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RNU6-384P-201ENST00000364900 104 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 SNORD116-29-201ENST00000384516 83 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RNU6-140P-201ENST00000384566 108 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 MTHFD2P2-201ENST00000407725 247 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 DBIP2-201ENST00000419076 262 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC017083.1-201ENST00000428093 483 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 NDUFB1P1-201ENST00000435191 180 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AL583843.1-201ENST00000456070 346 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC130509.1-201ENST00000464158 433 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RPS23P3-201ENST00000470993 430 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RN7SL601P-201ENST00000471221 293 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RPL21P13-201ENST00000488305 481 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 HMGB3P15-201ENST00000507326 574 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 SNORA74D-201ENST00000516404 141 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RNU6-1282P-201ENST00000516735 96 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 IGKV2-23-201ENST00000518729 323 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AP005597.4-201ENST00000526762 229 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms