Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 MAPK10-373ENST00000641983 6772 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-890P-201ENST00000384121 107 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-1197P-201ENST00000391183 107 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU6ATAC-201ENST00000408749 126 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-1050P-201ENST00000410388 107 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU2-71P-201ENST00000411395 189 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 PMCHL1-202ENST00000423102 261 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 GOT2P5-201ENST00000433995 546 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AL135752.1-201ENST00000479477 471 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AL163540.1-201ENST00000485382 386 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC020593.1-201ENST00000507399 299 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU1-95P-201ENST00000516357 160 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 SNORA70.18-201ENST00000516696 98 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNU1-128P-201ENST00000516704 160 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RNA5SP468-201ENST00000516782 93 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 HMGB1P14-201ENST00000557424 591 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 KLKP1-201ENST00000595979 403 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AC039056.2-201ENST00000622261 511 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 AL359693.1-201ENST00000614959 2407 ntBASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PCIF1Q9H4Z3 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.77
PCIF1Q9H4Z3 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-1115P-201ENST00000362490 106 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 DEFB109C-201ENST00000382575 264 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 DEFB109B-201ENST00000382656 264 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-1040P-201ENST00000383974 107 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 MIR606-201ENST00000384851 96 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AL445529.1-201ENST00000398713 389 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 Y_RNA.623-201ENST00000411128 95 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 Z99755.1-201ENST00000414048 380 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 USP9YP30-201ENST00000430729 455 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC236972.1-201ENST00000433225 199 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AL645568.3-201ENST00000433683 316 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AL137792.2-201ENST00000443484 235 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 NIPA2P5-201ENST00000452282 464 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 SNORD5.1-201ENST00000458800 75 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC097473.1-201ENST00000508142 408 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC104619.4-201ENST00000510773 249 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-327P-201ENST00000516270 127 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 SNORA31.19-201ENST00000517079 126 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC022634.1-201ENST00000520765 532 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 SNRPGP18-201ENST00000553000 214 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC011494.1-201ENST00000596454 237 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC020914.4-201ENST00000597690 277 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC006077.1-201ENST00000604746 343 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC004805.2-201ENST00000605382 482 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC004825.2-201ENST00000616634 455 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 PISRT1.1-201ENST00000616930 107 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 AC092608.2-201ENST00000624427 218 ntBASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
PCIF1Q9H4Z3 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-50P-201ENST00000362356 103 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 Y_RNA.151-201ENST00000363566 112 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-1059P-201ENST00000363752 98 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 SNORA33.2-201ENST00000365413 134 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 SNORA40C-201ENST00000391285 128 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RNA5SP239-201ENST00000410218 129 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RNA5SP129-201ENST00000410276 118 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RNU2-68P-201ENST00000410878 191 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-293P-201ENST00000411259 106 ntBASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.95□□□□□ -1.78
PCIF1Q9H4Z3 DBIP2-201ENST00000419076 262 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms