Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC009902.1-201ENST00000519351 183 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 EIF1P4-201ENST00000572664 335 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC008521.1-201ENST00000587471 187 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC024153.1-201ENST00000603103 365 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 MIR15A-201ENST00000607334 83 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC069234.5-201ENST00000611056 416 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC107871.2-201ENST00000612894 502 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AL359547.2-201ENST00000615810 418 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC015540.1-201ENST00000615828 501 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 MIR7843-201ENST00000622274 79 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 MIR6733-201ENST00000635723 61 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 Z99571.1-201ENST00000636677 394 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
LIME1Q9H400 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.47□□□□□ -2.01
LIME1Q9H400 ELF2P3-201ENST00000445099 1506 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LIME1Q9H400 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
LIME1Q9H400 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 RNU6-884P-201ENST00000363889 107 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 RNU4-48P-201ENST00000365559 182 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 RNU6-851P-201ENST00000384565 107 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 MTCO3P41-201ENST00000414801 328 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.46□□□□□ -2.02
LIME1Q9H400 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 HMGB1P9-201ENST00000429856 646 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 MTND4P25-201ENST00000441039 533 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.46□□□□□ -2.02
LIME1Q9H400 AL356010.1-201ENST00000456364 102 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC126182.1-201ENST00000478134 357 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 RPS27AP10-201ENST00000496103 208 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.46□□□□□ -2.02
LIME1Q9H400 AC114786.4-201ENST00000508771 728 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.46□□□□□ -2.02
LIME1Q9H400 Y_RNA.689-201ENST00000516589 107 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.46□□□□□ -2.02
LIME1Q9H400 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.46□□□□□ -2.02
LIME1Q9H400 MIR4775-201ENST00000581168 75 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 BNIP3P9-201ENST00000603714 553 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC025449.1-201ENST00000603896 529 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 NUTF2P8-201ENST00000604593 363 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AL359740.1-201ENST00000624340 592 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AL157786.1-207ENST00000627771 695 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
LIME1Q9H400 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
LIME1Q9H400 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
LIME1Q9H400 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
LIME1Q9H400 MTND5P7-201ENST00000413558 1798 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 AC008669.1-201ENST00000565823 2178 ntBASIC2.46□□□□□ -2.02
LIME1Q9H400 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LIME1Q9H400 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL139276.1-201ENST00000311910 1001 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 OR56A5-201ENST00000340110 738 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 Y_RNA.41-201ENST00000362646 102 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 RNU1-35P-201ENST00000362782 153 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 RNU6-1120P-201ENST00000362988 108 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 Y_RNA.296-201ENST00000364930 108 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 SNORD115-7-201ENST00000365306 82 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 RNU1-73P-201ENST00000383971 164 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 SNORA70B-201ENST00000384210 135 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 Y_RNA.576-201ENST00000384781 102 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 NDUFS5P4-201ENST00000412983 318 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 HMGN2P30-201ENST00000423237 256 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL451074.3-201ENST00000437709 472 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL513328.1-201ENST00000446460 224 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 FDX1P2-201ENST00000450769 375 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 MTATP6P7-201ENST00000453315 681 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AC104472.2-201ENST00000469035 601 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AC233702.1-201ENST00000482905 502 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 RPL36AP51-201ENST00000487216 318 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AC117522.3-201ENST00000507974 584 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.45□□□□□ -2.02
LIME1Q9H400 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 RNU6-123P-201ENST00000516163 102 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 RNU6-720P-201ENST00000516363 108 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.45□□□□□ -2.02
LIME1Q9H400 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 DNAJC8P1-201ENST00000554535 372 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AL157871.3-201ENST00000557231 293 ntBASIC2.45□□□□□ -2.02
LIME1Q9H400 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.45□□□□□ -2.02
LIME1Q9H400 AL355598.1-201ENST00000604169 202 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms