Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC007938.3-201ENST00000604965 623 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC017083.3-201ENST00000609955 700 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 RNU6-1090P-201ENST00000364065 94 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.256-201ENST00000364594 104 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 MIR1-2-201ENST00000384961 85 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 SNORD115-47-201ENST00000391226 86 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AL590004.2-201ENST00000404787 371 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC093106.2-201ENST00000428212 385 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 FCF1P1-201ENST00000432690 571 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC002486.1-201ENST00000435098 391 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 MTATP6P13-201ENST00000438531 667 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 RPL23AP58-201ENST00000440453 469 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 RBMX2P4-201ENST00000441256 376 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 FGF7P6-202ENST00000451282 293 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC008571.1-201ENST00000467232 300 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC007182.2-201ENST00000489251 402 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC109927.2-201ENST00000506416 303 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 ERHP1-201ENST00000523006 310 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 ELOCP31-201ENST00000540463 467 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 SUB1P2-201ENST00000556401 297 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 ZNF519P2-201ENST00000557032 169 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC005951.2-201ENST00000576282 495 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AL121992.2-201ENST00000606262 256 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AP001596.2-201ENST00000608410 312 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC004067.1-201ENST00000608733 700 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 Z82195.2-201ENST00000612348 18351 ntBASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
UPF3AQ9H1J1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 SNORD56.2-201ENST00000363242 71 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.248-201ENST00000364501 109 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 SNORA14A-201ENST00000364773 135 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 SNORA23-201ENST00000365128 182 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 RNU6-108P-201ENST00000365558 107 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AL359511.1-201ENST00000402970 211 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 ISCA1P1-201ENST00000426679 387 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 TOMM20P4-201ENST00000427861 435 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AL139415.2-201ENST00000431968 163 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AC024082.2-201ENST00000434771 238 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 RPL35AP22-201ENST00000436855 335 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 WASF1P1-201ENST00000447560 1131 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 SNRPGP6-201ENST00000451124 220 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 RPS29P12-201ENST00000460178 152 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AL049714.1-201ENST00000466686 347 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 RN7SL636P-201ENST00000497504 294 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 RNU6-826P-201ENST00000516827 104 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.704-201ENST00000516851 102 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 IGKV3-31-201ENST00000523109 329 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 DNAJC8P1-201ENST00000554535 372 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AL355836.1-201ENST00000555951 870 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AC105224.1-201ENST00000587055 421 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AC007014.2-201ENST00000615581 479 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 U6atac.1-201ENST00000616025 117 ntBASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
UPF3AQ9H1J1 AC006020.1-201ENST00000420179 1854 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 RNU1-100P-201ENST00000365255 165 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 RNU6-76P-201ENST00000384060 104 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.450-201ENST00000384198 113 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 RNU6-456P-201ENST00000384493 107 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MIR558-201ENST00000384920 94 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL136372.1-201ENST00000403060 228 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL359634.1-202ENST00000404721 284 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 RPL21P24-201ENST00000413752 448 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MTND1P23-201ENST00000416931 372 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC018630.2-202ENST00000422992 927 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL356320.1-201ENST00000429616 163 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MTCO3P45-201ENST00000443036 613 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms