Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC004852.3-201ENST00000614131 326 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 AC090517.2-201ENST00000614966 680 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.83□□□□□ -1.96
USP28Q96RU2 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.83□□□□□ -1.96
USP28Q96RU2 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP28Q96RU2 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
USP28Q96RU2 AC010680.1-201ENST00000590024 3590 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.83□□□□□ -1.96
USP28Q96RU2 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
USP28Q96RU2 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.82□□□□□ -1.96
USP28Q96RU2 RNU1-105P-201ENST00000363470 161 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 RNY1P12-201ENST00000364251 105 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 Y_RNA.367-201ENST00000365544 101 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 RNU5E-6P-201ENST00000365574 115 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 MIR518C-201ENST00000384822 101 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 MIR27B-201ENST00000385129 97 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 SNORD115-47-201ENST00000391226 86 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 ISCA1P1-201ENST00000426679 387 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 GPR143P-201ENST00000434155 205 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.82□□□□□ -1.96
USP28Q96RU2 UBE2V1P8-201ENST00000437166 265 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
USP28Q96RU2 PSPHP1-201ENST00000450062 261 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC108938.1-201ENST00000451204 136 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC003071.1-201ENST00000451219 789 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 AIG1P1-201ENST00000503376 148 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 AP001893.2-201ENST00000526949 202 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 OR5BN1P-201ENST00000532955 829 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 AC136619.2-201ENST00000563361 631 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.82□□□□□ -1.96
USP28Q96RU2 MTATP6P3-201ENST00000581686 676 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC098848.2-201ENST00000588023 330 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AL137843.1-201ENST00000605078 385 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC005000.2-201ENST00000605468 310 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AL137847.3-201ENST00000611521 109 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 AC073308.1-201ENST00000623696 305 ntBASIC2.82□□□□□ -1.96
USP28Q96RU2 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.82□□□□□ -1.96
USP28Q96RU2 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
USP28Q96RU2 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.81□□□□□ -1.96
USP28Q96RU2 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
USP28Q96RU2 MIR21-201ENST00000362134 72 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 RNU4-12P-201ENST00000365233 139 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 SMIM11P1-201ENST00000369586 178 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 RNU6-701P-201ENST00000384059 107 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 MIR558-201ENST00000384920 94 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 UBE2V1P2-201ENST00000397758 440 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 TXNP7-201ENST00000406296 293 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 RNU6-193P-201ENST00000410977 107 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC114491.1-201ENST00000416095 246 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 MTATP6P18-201ENST00000417994 673 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 RPL7P37-201ENST00000425095 738 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.81□□□□□ -1.96
USP28Q96RU2 MTATP6P16-201ENST00000434543 526 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.81□□□□□ -1.96
USP28Q96RU2 AC023194.1-201ENST00000493084 308 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.81□□□□□ -1.96
USP28Q96RU2 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.81□□□□□ -1.96
USP28Q96RU2 RN7SKP24-201ENST00000515888 284 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.81□□□□□ -1.96
USP28Q96RU2 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.81□□□□□ -1.96
USP28Q96RU2 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.81□□□□□ -1.96
USP28Q96RU2 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.81□□□□□ -1.96
USP28Q96RU2 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.81□□□□□ -1.96
USP28Q96RU2 AL035413.2-201ENST00000604801 525 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AP002360.4-201ENST00000606980 481 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC135507.2-201ENST00000612443 309 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC010133.1-201ENST00000615809 842 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 SNHG22-203ENST00000617833 660 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC139792.3-201ENST00000623525 224 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC093648.1-201ENST00000623546 606 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC006386.2-201ENST00000624491 75 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 AC012005.1-201ENST00000624575 75 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 ELF2P3-201ENST00000445099 1506 ntBASIC2.81□□□□□ -1.96
USP28Q96RU2 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
USP28Q96RU2 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP28Q96RU2 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
USP28Q96RU2 HSPE1P11-201ENST00000339579 310 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 RNU6-223P-201ENST00000362830 107 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 RNU6-108P-201ENST00000365558 107 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 MIR627-201ENST00000384979 97 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 MIR514A1-201ENST00000385133 98 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 MIR767-201ENST00000390228 109 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AL590002.1-201ENST00000406554 418 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 RNU2-25P-201ENST00000411041 191 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AL096701.2-201ENST00000416920 238 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 EIF1P1-201ENST00000421436 341 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
USP28Q96RU2 AC091390.3-201ENST00000426478 338 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC137499.1-201ENST00000427602 88 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AL356867.1-201ENST00000429623 299 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.8□□□□□ -1.96
USP28Q96RU2 MTATP6P13-201ENST00000438531 667 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms