Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MTATP6P17-201ENST00000431030 672 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 CETN4P-201ENST00000432407 469 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 CR769767.1-201ENST00000436337 346 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 USP9YP12-201ENST00000450481 570 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC108059.3-201ENST00000456388 214 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AL441985.1-201ENST00000457727 251 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AP001324.2-201ENST00000461163 319 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC139453.3-201ENST00000493276 369 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 RNA5SP320-201ENST00000516263 124 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 NRBF2P1-201ENST00000587407 859 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AL645944.1-201ENST00000603857 493 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC121334.2-201ENST00000605387 271 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AL161423.1-201ENST00000613700 262 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC024581.2-201ENST00000619986 252 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC092104.1-201ENST00000497346 1441 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC062016.1-201ENST00000355719 319 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 RNY4P24-201ENST00000362735 96 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 RNU6-188P-201ENST00000364207 107 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 MIR196B-201ENST00000384852 84 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AL049545.1-201ENST00000401856 572 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 NUP35P1-201ENST00000422734 947 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC016691.1-201ENST00000441321 413 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AL022238.1-201ENST00000442557 355 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 TAF9P1-201ENST00000445421 515 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AL513328.1-201ENST00000446460 224 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 TAF9P2-201ENST00000454958 515 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC004924.1-201ENST00000480160 781 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 MTND1P3-201ENST00000484956 952 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 MTND1P22-201ENST00000510572 951 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AL138976.2-201ENST00000563989 694 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC009977.1-201ENST00000586015 570 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AF131215.7-201ENST00000602443 707 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC112191.3-201ENST00000604371 277 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC007363.1-201ENST00000604736 620 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC138749.5-201ENST00000611461 208 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AL137847.3-201ENST00000611521 109 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 AC116165.2-201ENST00000616705 206 ntBASIC2.43□□□□□ -2.02
VPS39Q96JC1 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.43□□□□□ -2.02
VPS39Q96JC1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS39Q96JC1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS39Q96JC1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 MTND4P4-201ENST00000439033 1366 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 MIR21-201ENST00000362134 72 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 U3.4-201ENST00000363352 213 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RNU6-511P-201ENST00000363496 107 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RNU6-288P-201ENST00000363690 104 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 SNORA6-201ENST00000384033 151 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 FCF1P10-201ENST00000407590 479 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RN7SKP158-201ENST00000410453 326 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RNU6-195P-201ENST00000411352 109 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC009518.2-201ENST00000418056 731 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 RAP1BP2-201ENST00000478270 544 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RN7SL432P-201ENST00000484057 298 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC068781.1-201ENST00000488231 618 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC010587.1-201ENST00000505809 469 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AF213884.2-201ENST00000510417 903 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 FABP5P5-201ENST00000515537 406 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 SNORA31.11-201ENST00000516528 139 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RNA5SP337-201ENST00000517007 109 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 RNU6-1220P-201ENST00000517126 108 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AP003467.2-201ENST00000520175 319 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 MIR5694-201ENST00000581190 76 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC011890.2-201ENST00000613393 294 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms